Aromatoleum bremense: pbN1_39630
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Entry
pbN1_39630 CDS
T07149
Symbol
rtcB
Name
(GenBank) tRNA-splicing ligase
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
abre
Aromatoleum bremense
Brite
KEGG Orthology (KO) [BR:
abre00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
abre03016
]
pbN1_39630 (rtcB)
Enzymes [BR:
abre01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
pbN1_39630 (rtcB)
Transfer RNA biogenesis [BR:
abre03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
pbN1_39630 (rtcB)
Prokaryotic type
tRNA splicing ligases
pbN1_39630 (rtcB)
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
Motif
Other DBs
NCBI-ProteinID:
QTQ33946
LinkDB
All DBs
Position
4121373..4122803
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AA seq
476 aa
AA seq
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MELDLFARRSDYQWEIPPHGAMRVPGVIYADETLIRAMDHKVYEQTVNVACLPGIVRAAY
VMPDAHWGYGFPIGGVAAFDPDEGGVVSAGGVGFDISCGVRCLHTGLTRDDILRVQKPLA
DRLFQCIPAGVGSSGAIRLDSQEMDAMLAGGAKWAVERGWGEPADLERIEEGGRMKGARP
AAVSQQAKKRQRDEMGTLGSGNHYLEIQEVVAIYDRPAAAAFGLIEGATVIMVHCGSRGL
GHQIGTEFLKQMAIAAADHGIILPDRELACAPIQSPLGQEYLGAMRAGINCALANRQILT
QLVRQVFAELLPAARLSLLYDVSHNTCKVETHRVDGRMRELYVHRKGATRAFGPGHPDLP
ETLRASGQPVLIGGSMGTGSYILRGVAESEELAFASACHGAGRAMSRHRAQHTWHGRQVI
DDLAARGILIRSPTQRGVAEEAPDAYKDVGAVVDAAEAAGLARKVARVAPLICVKG
NT seq
1431 nt
NT seq
+upstream
nt +downstream
nt
atggaactcgacctgtttgcgcggcgctccgattatcaatgggaaatcccgccccacggc
gcgatgcgggtgccgggcgtgatctacgccgacgagacgctgatccgcgcgatggaccac
aaggtgtacgagcaaacggtcaatgtcgcatgcctgccggggatcgtgcgtgccgcctat
gtgatgcccgatgcgcactggggctacggttttccgatcggcggggtggccgccttcgac
cccgacgaaggtggcgtggtgtcagccggcggggtcggattcgacatctcttgcggggtg
cgctgcctgcacacggggctcacccgcgacgacatcctgcgggtgcaaaagccgctggcc
gaccgcctgttccagtgcattcccgccggggtcggcagttccggcgcgatccgcctcgac
agccaggagatggacgccatgctggccggcggagcgaaatgggcggtcgagcgcggctgg
ggcgagcccgccgacctcgaacgcatcgaggaaggcggccgcatgaagggcgcacgcccg
gcggcggtgtcgcagcaggccaagaagcgccagcgcgacgagatgggcacgctgggcagc
ggcaaccattacctggagatccaggaagttgtcgccatctacgaccggcccgcggcggca
gccttcggcctgatcgagggcgcgacggtgatcatggtccactgcggctcgcgcggactg
ggccaccagatcggcaccgagttcctcaagcagatggcaatcgccgcggccgatcacggc
atcattctccccgaccgcgagctcgcctgcgcgccgatccagtcgccgctgggccaggaa
tatctgggcgcgatgcgggcagggatcaactgcgccttggccaaccgccagatcctcacc
cagttggtacgccaggtcttcgcggaactgctgccggcggcgcggctgtccctgctctac
gacgtctcgcacaacacgtgcaaggtggagacccaccgggtcgacggccgtatgcgcgag
ctctacgtccaccgcaagggggcgacccgcgccttcggccctggccaccccgacctgccg
gagacgctgcgtgcgagcggccaaccggtcttgatcggcggctcgatgggcaccggttcg
tacattctgcgcggcgtcgcggagtccgaagagctcgcctttgcctcggcctgccatggc
gcggggcgcgccatgagtcgccaccgcgcccagcacacttggcacggccgccaggtgatc
gacgatctcgcggcgcgcggcattctcatccgcagcccaacgcagcgcggcgtggccgag
gaagcccctgacgcctacaaggatgtcggcgctgtggtcgacgctgccgaggcggccggc
ctcgcgcgcaaggtggcccgggtcgcgccgctgatctgcgtgaagggctga
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