Argiope bruennichi (wasp spider): 129972872
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Entry
129972872 CDS
T09870
Name
(RefSeq) SKI2 subunit of superkiller complex protein-like
KO
K12599
antiviral helicase SKI2 [EC:
5.6.2.6
]
Organism
abru
Argiope bruennichi (wasp spider)
Pathway
abru03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
abru00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
129972872
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
abru03019
]
129972872
Enzymes [BR:
abru01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
129972872
Messenger RNA biogenesis [BR:
abru03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
129972872
mRNA degradation factors
3'-5' decay
Ski complex
129972872
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DSHCT
Ski2_N
DEAD
MTR4_beta-barrel
DEXQc_Suv3
ResIII
Helicase_C
MTR4-like_stalk
ATPase_2
PhoH
nSTAND3
DUF3420
Motif
Other DBs
NCBI-GeneID:
129972872
NCBI-ProteinID:
XP_055943147
LinkDB
All DBs
Position
6:complement(99972225..100005256)
Genome browser
AA seq
1223 aa
AA seq
DB search
MDIGVFEIPKDLEVLPLGENGEMEVLPVSGKNRLNTSKLPCGLPPILPDTNTMLNSFLEN
PEKLPIFHLDAVQRLVPIKPNVSSLYSINLCPLQTTLNVRRDMMTGKLLGFTEEVKDIFE
GTHNTSTSLSRAPGPPDAGVRGSTSSFPFWPGGMDEPWADLLKKESLDASLFEEDLLDTP
PGFKCGMKFERKAQDQVDYIHTQPQKINLTELLAMDDDLDLEDLTEPEDKKEVDLEQTQL
KQPDKSSDAEDAFLKLTSLPVLNISETEKKKPVTNYEWAVIDDISRSVEDFNEKVAEMAM
TYDFTLDPFQQKAVLHLEKKESVFVAAHTSAGKTVVAEYAIALARKHVARVIYTSPIKAL
SNQKYRDFKEKFEDVGLITGDVQINPAAFCLIMTTEILRSMLYHGSDVVRELEWVIFDEV
HYINDSERGVVWEEVFIMLPDHVNLIMLSATVPNTAEFAEWLGGIKKRKIYVISTLKRPV
PLVHYLYTGSVGKSENDIFPIVDPSGKFLTDEYMKACNSKKEKDKSKSSSGPKGPKYNIT
LAQEKNVYIGLLGYLQKKDLLPAVCFTLSRKKCNTHAEILSSKDLTTQVEKREITKFFNE
CISKLKAEDRKLPQVKLMGEQLARGFGVHHSGILPILKEVVEMLFQRSLLKILFATETFA
MGVNMPARTVVFDSIRKHDGLNFRDLKPSEYIQMAGRAGRRGKDTVGTVIILCKADVPDS
SALHNMMLGKPTKLESQFKLTYSMILNLLKIKTFRVEDVIKRSFGESDNQKQQKVYRELL
TEATQKLASLNKLDCSLCNVDMAQYIMSLKEVRLLKNEVMEKKCSQALANKLLVPGRILV
VSTNDHQNVLCTLLSIDKENKMKVLGIAEKNKPTDSKNSSTKANILPWTKKLFYPSEKQP
DILNVTFSDIEIIGNKVMRIDDSAILKECKRFHAMNSNPGHSISAAFQELCCLCEANLNG
FPSANVNLKDINFAPKVHNLDRLEKALESFTCVKCPEFSKHFEDLYTFMQMEEDIKEYSY
KLSEQSLSLHPDYESRKAVLKTLGYIDENENVQLKGAVAREMSNHELLITELLVKSVFTE
SPPEEVAALLSCMVFQQKNDDANLELPSHMIEKIKEIREVAMDISLVQSQNNILDPNFVS
QYNFYLVPVVYEWAKGTIFAEIMKKTDVDEGIIVRSIQRLSELLKDVRNGANLVGDTALA
KKMEDASHQIKRDIVFAASLYTQ
NT seq
3672 nt
NT seq
+upstream
nt +downstream
nt
atggatattggagtatttgaaattccaaaagatttggaagtcttgcctttgggagaaaat
ggagaaatggaagtgctgccggtttcggggaaaaaccgattgaatacttcgaaattgcca
tgtgggcttccaccaattcttcctgataccaatactatgctgaattcatttttagaaaat
cctgaaaaattgcctatttttcatttggatgctgtgcaaagattggttcctattaagcca
aatgtttcctctctttactctataaatttatgtcctcttcaaacaactttgaatgtaaga
agggacatgatgactggaaagctgttaggtttcactgaggaagtaaaagacatctttgag
ggaacccacaacacatcaacatcattatccagagctcctggtcctcctgatgcaggagtg
agaggtagcacaagtagttttccattttggcctggtggaatggacgaaccttgggctgac
ttattgaaaaaagagagtttggatgcttcactttttgaagaagatcttcttgacactcct
cctggattcaaatgtggaatgaaatttgaaaggaaagcccaggatcaagttgattacatt
catactcagcctcaaaaaattaacctcacagaattattggccatggatgatgatcttgat
ttggaagatttgactgagcctgaagataaaaaagaagtggatctcgaacagacccaactc
aaacaaccagataaatcatctgatgctgaagatgcctttttgaaattgacatcattacca
gtgttgaatatcagtgaaactgagaaaaagaagcctgttacgaactacgaatgggcggtt
attgatgatataagtcgatcagttgaagattttaatgaaaaagttgctgaaatggccatg
acttatgattttacacttgatccttttcaacaaaaagctgttctgcatttggaaaagaaa
gaaagtgtatttgttgcagcccatacttctgcaggtaaaacagtagttgctgaatatgcg
attgccttagcaagaaaacatgttgccagagtaatatatacatctccaataaaagctctt
tccaatcagaagtatagagattttaaagaaaagtttgaagatgttgggttgataactggg
gatgtgcagataaatcctgctgctttttgtctgattatgactacagaaattttgaggtca
atgttatatcatggatcagatgttgttcgtgaattagaatgggtcatatttgatgaagtc
cattacataaatgattctgaacgtggtgttgtttgggaagaagttttcatcatgttgcca
gaccatgtaaatttaataatgttaagtgccactgtcccaaatacagcagaatttgctgag
tggttaggtggaatcaagaaaagaaagatatatgtgattagtactttaaagcgtcctgtc
cctttagtacattatttatatactggaagtgttggaaaatcagagaatgacatatttcca
attgttgatccttctggaaaatttttgactgatgagtacatgaaagcttgtaattctaaa
aaagagaaggacaaatctaaatcttcctcaggacccaaaggtccaaagtataatattact
ttagctcaggaaaagaatgtttacattggtctcttaggctatctgcagaaaaaagatctc
ttgccagctgtttgctttactctatcaagaaaaaaatgcaatacacatgcagaaatactg
tcaagtaaagatctaactacacaagtagaaaaaagggaaataacaaaatttttcaatgaa
tgtatatcgaaacttaaagctgaagatagaaaacttcctcaggtgaaattaatgggtgaa
caacttgctcgaggatttggggttcatcatagtggaattttacctatccttaaagaagtg
gtagaaatgttgtttcagaggagcttattaaaaattctctttgccacggaaacatttgcc
atgggtgttaacatgccagctcgaactgtagtatttgattccattcgtaaacatgatggt
ctcaatttccgtgatttgaaaccatctgaatatatccaaatggctggtcgtgcaggaaga
cgtggtaaagatactgtaggaacggtgataattctatgcaaagctgatgttcccgattcc
tcagcattacataatatgatgctgggaaaacctaccaagctagaatctcaattcaaattg
acatacagtatgatattgaatttgttaaaaataaaaacgtttcgggtggaagatgtcatt
aaacgatcctttggagaatcagataatcaaaaacagcaaaaagtttatcgagaactcctg
actgaagccacacagaaacttgcaagcttaaacaaattagattgttctttatgtaatgtt
gacatggctcagtacattatgtccttaaaagaagttagacttttgaagaatgaagttatg
gaaaagaaatgttcacaagcgctagctaataaattgttggttccaggaagaattcttgta
gtgtcgacaaatgatcatcaaaatgttttatgcacattactaagtatagataaagaaaat
aaaatgaaagttcttggtattgctgaaaaaaataagccaacagattccaaaaactcatca
acaaaagcaaatattttgccttggactaagaaattattttatcctagtgagaaacaacct
gacattctgaatgtgaccttttctgacattgaaataataggaaataaagtcatgaggata
gatgatagtgccatacttaaggagtgcaagagatttcatgcaatgaattcaaaccctggt
cattccattagtgctgcatttcaggaactgtgttgtctttgtgaagcaaacttaaatggc
tttccatcagccaatgtaaatttaaaagatataaattttgctcctaaagtacataattta
gacaggttagaaaaagctttggaaagctttacatgtgtaaaatgtcctgaattttctaag
cattttgaagatctttacacttttatgcaaatggaagaagatattaaagaatattcttac
aagttatcagagcaaagcctttctctgcatcctgattatgaatctcgaaaagctgtactt
aaaacattaggatacatagatgaaaatgagaatgttcaactaaagggagcagttgccaga
gaaatgagcaatcatgaacttcttatcacagaacttcttgttaagtctgttttcacagaa
agtccaccagaagaagttgcagcattattatcatgcatggtctttcaacagaaaaatgat
gatgcaaatttggaattgcccagtcatatgattgagaaaatcaaagaaatacgagaagtg
gctatggacatatctttagtgcaatctcaaaacaatatccttgatccaaactttgtttcc
cagtacaatttttatttagtacctgttgtttatgaatgggctaaaggcacaatatttgca
gaaatcatgaaaaagacggacgttgatgaaggcattattgtccgaagtatccaacgatta
agcgaattgttaaaggacgtccgtaatggtgctaatctggttggtgatactgctctagcc
aaaaagatggaagatgcttctcaccaaataaaaagagatatcgtttttgctgcgagctta
tatacccagtaa
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