Argiope bruennichi (wasp spider): 129983711
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Entry
129983711 CDS
T09870
Name
(RefSeq) exosome RNA helicase MTR4-like
KO
K12598
ATP-dependent RNA helicase DOB1 [EC:
5.6.2.6
]
Organism
abru
Argiope bruennichi (wasp spider)
Pathway
abru03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
abru00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
129983711
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
abru03019
]
129983711
03041 Spliceosome [BR:
abru03041
]
129983711
03009 Ribosome biogenesis [BR:
abru03009
]
129983711
03016 Transfer RNA biogenesis [BR:
abru03016
]
129983711
Enzymes [BR:
abru01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
129983711
Messenger RNA biogenesis [BR:
abru03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
TRAMP complex
129983711
Spliceosome [BR:
abru03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
129983711
Complex C
U4/U6.U5 tri-SnRNP related factors
129983711
Ribosome biogenesis [BR:
abru03009
]
Eukaryotic type
Pre-60S particles
Helicases
129983711
Transfer RNA biogenesis [BR:
abru03016
]
Eukaryotic type
tRNA degradation factors
TRAMP complex
129983711
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DSHCT
MTR4_beta-barrel
DEAD
MTR4-like_stalk
DEXQc_Suv3
Helicase_C
ResIII
nSTAND3
FANCI_S3
ATPase_2
HTH_ParB
Motif
Other DBs
NCBI-GeneID:
129983711
NCBI-ProteinID:
XP_055949285
LinkDB
All DBs
Position
9:complement(108562812..108591120)
Genome browser
AA seq
1025 aa
AA seq
DB search
MSDIDIDDLFSVFDDSSKKPKQKDCISVKQEKDPQKVSNFLKEITEGKRSYDDEDESAEL
KKLKVSNILDDINPEEFSSRIQVHVVETVEACLHEVAVPHGSEYIPLRQSQNPPSRKYPF
ILDPFQKEAILCLENNQSVLVSAHTSAGKTVVAEYAIAMSLRDKQRVIYTTPIKALSNQK
YREFYEEFKDVGLLTGDVTINPSASCLIMTTEILRSMLYRGSEVMREVGWVIFDEIHYMR
DKERGVVWEETIILLPDSVHYVFLSATIPNARQFAEWICHLHHQPCHVVYTDYRPVPLQQ
YIFPAGGDGLHLVVDESGNFREENFNTAMSVLQVAGGAAKGDSAMKGRKGGFKDGSNCYK
IVKMIMERNFAPVIVFSFSKKECESYAMQMAKLDFNTDDEKPLVEEVFKNAMDVLSDEDK
KLPQVEHVLPLLKRGIGIHHSGLLPILKETIEILFSEGLIKALFATETFAMGLNMPARTV
LFTNARKFDGKDFRWVTSGEYIQMSGRAGRRGLDERGIVILMVDEKMSPSVGKEIVKGLP
DPINSAFHLTYNMVLNLLRVDEINPEYMLERSFFQFQNYSSIPQLYEKIKTLQETHDSIN
LDREDDVDSYYKIKKHLASLSEEYHAYITQPEYCVPFFQPGRLVKVKNGDDDFGWGMIIN
YQKKTLQSGNNKESVFYVVDVLLQVSKESSETKVTSNLKPPAPNEKGVMQVVPIKLNLIQ
QLSTVRAHTPKDLRPIDNRMQVLRTIQAILERFPDGLPLLDPIEDMKIKEQGLKDVIKKI
EAFTSRLNHHPLHNDPSIDNLLDLYKKKLQIESEIKEAKAELKKARSLLQMDELKCRKRV
LRRMGYCTASDVIEIKGRVACEISSADELLLTEMIFNGAFNNLNVHQTTALLSCFVFQEK
SNEMPKLTEELSGPLRLMQDTARRIAKISKECRLEIDLEQYVDSFKPHLMDVVYSWSKGA
SFAHICKMTDVFEGSVIRCMRRLEELMRQMCQAAKAIGNTEMENKFSEGIKLIKRDIVFA
ASLYL
NT seq
3078 nt
NT seq
+upstream
nt +downstream
nt
atgagtgatattgacattgatgatctttttagtgtgttcgatgattcttctaaaaaaccg
aagcagaaagattgtatttcagtgaaacaagagaaagatccacagaaagttagcaatttt
ttgaaagaaattactgaaggaaaacgatcatatgatgatgaggatgaatctgcagaatta
aaaaaattgaaggtttcaaacattcttgatgatataaaccctgaagaattttcttctaga
attcaagtccatgttgttgagacagttgaagcttgtcttcatgaggttgctgtaccacat
ggctctgaatatattcctttaaggcaaagtcaaaatccaccatctcgtaaatatccattc
attttagatccatttcaaaaagaagctattctatgtttggaaaacaatcagtctgtgctt
gtttctgcccacacatctgctggaaagacagtagtagctgagtatgctatagctatgtct
ttaagagacaaacaaagagtcatttacacaactcctatcaaggctctgagcaatcaaaaa
tacagagaattttatgaagaatttaaagatgtaggtttacttactggagatgttacaatt
aatccttcagctagttgtttgattatgaccacagagattttaagaagtatgttgtatagg
ggttctgaagttatgagagaagttggatgggtaatttttgatgaaattcattatatgaga
gataaagaaagaggtgttgtatgggaagagactatcatacttttacctgatagtgtgcat
tatgtgtttctatctgctactattcccaatgcaagacaatttgctgaatggatttgccat
cttcatcatcagccttgccatgttgtttatactgattatagacctgtgcctctgcaacag
tatatatttcctgctggtggggatggtctgcacttggttgtggatgaaagtggtaatttt
cgggaagagaattttaacactgctatgagtgtacttcaggtagctggtggtgctgcaaag
ggggattctgcaatgaaaggcagaaaagggggctttaaggatggttctaactgttataaa
atagtcaaaatgataatggaaagaaattttgctcctgtaattgtattcagtttcagtaaa
aaggaatgtgaatcttatgctatgcaaatggcaaaattagatttcaatactgatgatgaa
aagccactagttgaagaagtgttcaagaatgcaatggatgttttatcagatgaagataaa
aaattgcctcaggtggaacatgtattaccacttcttaagcggggcattggtattcatcat
tctggtctacttccaattcttaaggaaacaatagaaattcttttctcagaaggtttaatt
aaggcattatttgctacagagacttttgctatgggtttaaatatgccagccagaactgta
ttatttacaaatgctcgcaaatttgatggaaaagatttcagatgggttacatcaggtgaa
tatatacaaatgagtggacgtgctggtagaagaggtctggatgaaagaggtattgtgata
ttgatggtagatgagaaaatgagcccatctgttggaaaagaaatagtgaaggggcttccg
gatcctattaactctgcctttcatttgacttataatatggttctaaatttgttgagagta
gatgaaatcaatccagagtatatgttagagcgatctttcttccaatttcaaaattattct
tcaattccacaattgtatgaaaaaattaaaactttacaagaaacccatgattctattaac
ctggacagagaagatgatgttgattcatattataaaataaaaaaacacttggcttcccta
tcagaagaatatcatgcttatattacacagccagaatattgtgtcccttttttccaacct
ggaagactggtgaaggttaaaaatggagatgatgattttggatggggcatgattataaat
tatcagaaaaaaactcttcaatctggtaataataaagaatctgtattttatgttgttgat
gttttactccaagtttctaaagaaagttcagaaacaaaagtgacgtctaatttaaagcct
cctgcaccaaatgaaaaaggtgttatgcaggttgtacccattaagttgaatttaattcaa
cagttaagcacagtacgagcacatactcctaaagatttaagacctattgacaacagaatg
caagttttgagaactattcaggctattttggaacgattccctgatggtttacctcttctt
gatccaattgaagatatgaaaataaaggagcaaggattaaaagatgttataaaaaaaatt
gaagctttcacttctcggctaaatcatcatcctcttcataatgacccatctatagacaac
ttacttgatctatataagaaaaaattgcagattgaaagtgagataaaggaagcaaaggca
gaattgaaaaaagcacgttcccttttgcaaatggatgaattgaaatgtcggaaaagagtt
ctgagaagaatgggttactgtactgcttctgatgttatagagattaaaggtcgtgttgca
tgtgaaattagcagtgctgatgaactcttattaacggaaatgatatttaatggggctttt
aacaacctaaatgttcatcaaacgactgctctcctcagttgttttgttttccaagagaaa
tcaaatgagatgccaaaattgactgaggagttatctggacctcttcgtctaatgcaggac
actgcccgtaggatagcaaaaataagtaaagaatgcagattagaaatagaccttgaacag
tatgtggattcttttaaaccacatctaatggatgttgtttattcctggagcaaaggggcc
agctttgcacatatctgtaaaatgaccgatgtttttgaaggtagtgtcattcgttgtatg
agaagattggaagaactcatgagacaaatgtgtcaagcagctaaagctattggaaataca
gaaatggaaaacaaattttcagaaggaattaaactcataaaacgggacattgtatttgct
gcaagcctttacctttaa
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