Argiope bruennichi (wasp spider): 129988179
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Entry
129988179 CDS
T09870
Name
(RefSeq) pre-mRNA-splicing factor syf1 homolog
KO
K12867
pre-mRNA-splicing factor SYF1
Organism
abru
Argiope bruennichi (wasp spider)
Pathway
abru03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
abru00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
129988179
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
abru03019
]
129988179
03041 Spliceosome [BR:
abru03041
]
129988179
Messenger RNA biogenesis [BR:
abru03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
129988179
Spliceosome [BR:
abru03041
]
Complex B
Other components
Prp19-related factors
129988179
Complex C
129988179
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HAT_Syf1_CNRKL1_C
HAT_Syf1_M
HAT_Syf1_CNRKL1_N
HAT_PRP39_C
HAT_PRP39_N
TPR_14
Suf
TPR_2
TPR_15
ARM_TT21_C
Mad3_BUB1_I
TPR_8
SNAP
ARM_TT21
RPN7
TPR_10
AbiH
DALR_1
PPR
Motif
Other DBs
NCBI-GeneID:
129988179
NCBI-ProteinID:
XP_055952310
LinkDB
All DBs
Position
10:complement(85337376..85364413)
Genome browser
AA seq
843 aa
AA seq
DB search
MINSDNNQKNVVVEDEDIPYEEEILRNPYSVKHWLRYIEFKKEAPKHVINLLYERALREL
PGSYIIWHKYLKLRRAQIRGKCVTDPAYEDVNSAFERALVFMHKMPRIWIDYCEFLSIQC
QITRTRHVFDRALRALPITQHHRIWPLYLKFVSSKGIPETAVRVYRRYLKLCSEDTEDFI
EYLLEINRLDEAAVKLAEIVNNEQFVSKHGKPKHQLWNELCELISKNPDEVHSLNVDAII
RDGLRRFSDQVGHFWNCLADYYIRSGLFDRARDIYEEAITTVMTVRDFTQVFDAYSQCEE
SLIKAKIEKVERGGATEEETLELDLRLAWFDYLLERRPLLLNSVLLRQNPHNVHEWHRRI
KLLEGKPKEIINTYTEAVQKVDPKLACGKLHTLWVAFAKFYESHKQIDDASLIFEKATQV
PYTEVDDLASVWCEWAEMEIRHNKFENALKLMQRATAMPVHKGSYHDQSLPVQERLYKSL
KVWLLYADLEEVLGTFKSIKAVYDRIIDLRIATPQVIINYGVFLEENNYFEEAFKAYEKG
ISLFKWPNVYDIWNTYLVKFLKRYGGTKLERARDLFEQCLESCPRKFAKSIYLLYAKLEE
EHGLARHAMAVYSRATKAVLPEEQFEMFNIYLKKAAEIYGVTHTREIYQEAIDLLPDTQA
KQMCLKFADLERKLGEIDRARAIYSHCSQMCDPRTNPDFWKTWKDFEVRHGNEDTMREML
RIKRSVQATFNTQVNFMSAQMLSAAVVAAGITVPDSEKDSMQNLEAQAKLLAFEGPKEAA
LNRSKVSFVRSEETNEKELEHVQTNNPDEINLDDSEDDEEKGDDIQVEERPVPDEVFGGL
KAN
NT seq
2532 nt
NT seq
+upstream
nt +downstream
nt
atgattaattcagataataatcagaagaatgtggtggtggaagatgaagacattccatac
gaagaagaaatactacgaaatccgtattcagttaagcattggttgcggtatatcgaattt
aaaaaagaagctcctaaacatgtgataaatcttctttatgaaagagctcttagagaattg
cctggaagttacattatttggcacaagtatttgaagctgagaagagctcaaattcgtgga
aaatgtgtaacagatcctgcttatgaagatgttaatagtgcttttgaaagagctttagtt
tttatgcacaagatgcctcgaatttggattgactattgtgaatttttatctatacaatgt
caaattactagaactcgccatgtgtttgatagagctttacgagcgttgccaatcactcaa
catcatcgaatatggcctttgtatttaaaatttgtgtcctctaaaggcatccctgaaaca
gcagttcgagtatatcggagatatttaaagctatgtagtgaagatacagaggacttcatt
gaatatttattggaaattaatcgccttgatgaagcagctgtgaagttagctgaaattgtc
aacaatgaacaatttgtttcaaaacatgggaaacctaaacatcagttatggaatgaatta
tgtgaactgatatcaaagaatcctgatgaagtacattccttgaatgttgatgctattata
cgagatggcttaagacgcttttctgaccaagtaggccatttttggaactgtttagctgat
tattatatcagaagtggcttatttgatcgagctcgagatatttatgaagaagctattact
actgttatgactgttcgtgattttactcaagtttttgatgcatactcacagtgtgaggaa
agtcttatcaaagcaaaaattgaaaaagtagaaaggggaggtgctacagaagaagaaact
cttgaattagatttacgactggcatggtttgattatcttttagagaggcggccactgctt
ttgaacagtgttctcttgcgacaaaatcctcacaatgtacatgaatggcatagaagaatc
aagttattagaaggaaaaccaaaggagattatcaatacatatactgaagcagtacagaag
gtggatcccaaactggcttgtggaaagctgcataccttatgggtggcctttgctaaattt
tatgaatcacataaacaaattgatgatgctagtctgatttttgaaaaagcaacccaagta
ccatatacagaagtggatgatttggcttcagtatggtgtgaatgggctgaaatggaaatt
cgtcacaacaaatttgaaaatgctttaaaacttatgcagcgtgcaactgcgatgcctgtg
cataaaggatcatatcatgatcagagtcttcctgttcaagaacgtctgtataaatctctg
aaagtttggctactttatgctgatttagaagaagttttgggaacattcaaatctataaaa
gctgtgtatgacagaattattgatcttagaattgcaacaccacaagtaattatcaattat
ggagtatttctagaagaaaacaattattttgaagaagcatttaaagcttatgagaaaggt
atatctctttttaaatggcccaacgtttatgatatttggaatacatatctagtgaagttt
ttgaaacgatatggtggaacaaaacttgaaagagccagagatttatttgaacagtgtctt
gaaagctgtccacggaaatttgctaaatcaatttatttgctatatgccaagttagaagaa
gaacatggtctggcaaggcatgctatggctgtatatagcagagctactaaagctgttctt
cctgaagagcaatttgagatgttcaatatatatctaaagaaagcagctgaaatttatggt
gtaactcatacacgtgaaatataccaagaggctattgatttattaccagatactcaagct
aaacaaatgtgtctaaaatttgctgatttggaacgcaaacttggtgaaattgatcgagct
cgagcgatatactcacactgtagtcaaatgtgtgatccaaggactaatccagatttctgg
aaaacttggaaagactttgaagttcggcatggtaatgaagatactatgcgagaaatgctt
agaattaaaaggagtgtccaggctacgtttaatactcaagtgaactttatgtctgctcag
atgcttagtgcagcagttgtagctgctggtattacagtgcctgattctgaaaaagatagc
atgcaaaatctggaagctcaagctaaacttcttgcatttgaaggacctaaagaagcagca
ttgaatagaagcaaagtttcatttgtgagaagtgaagaaacaaatgaaaaggagttggaa
catgttcaaactaataatccagatgaaattaacttggatgacagcgaggatgatgaggaa
aaaggtgatgatattcaagttgaagaaagacctgtaccagatgaagtatttggaggactg
aaagcaaattaa
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