Argiope bruennichi (wasp spider): 129991128
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Entry
129991128 CDS
T09870
Name
(RefSeq) regulator of nonsense transcripts 1-like
KO
K14326
regulator of nonsense transcripts 1 [EC:
5.6.2.5
5.6.2.3
]
Organism
abru
Argiope bruennichi (wasp spider)
Pathway
abru03013
Nucleocytoplasmic transport
abru03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
abru00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
129991128
03015 mRNA surveillance pathway
129991128
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
abru03019
]
129991128
Enzymes [BR:
abru01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
129991128
5.6.2.5 RNA 5'-3' helicase
129991128
Messenger RNA biogenesis [BR:
abru03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
129991128
mRNA cycle factors
Common to processing body (P body) and stress granule
129991128
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UPF1_Zn_bind
AAA_12
AAA_11
UPF1_1B_dom
AAA_19
AAA_30
ResIII
SLFN-g3_helicase
NPHP3_N
AAA_16
Helicase_RecD
nSTAND3
DEAD
UvrD-helicase
SRP54
ATPase
AAA_22
AAA_32
Motif
Other DBs
NCBI-GeneID:
129991128
NCBI-ProteinID:
XP_055954181
LinkDB
All DBs
Position
2:98421257..98444172
Genome browser
AA seq
1114 aa
AA seq
DB search
MSVDAYAPTAETLTFLDPEEGNDLLGADTQGSDFEFTDFSLASQTQASQLDQSQSTRSQL
NGPDLSLPNGLDRDVCTASQGLGELTFQEEEEDQYYTKDLPEHACKYCGIHDPSCVVQCN
VCKRWFCNGRGNTSGSHIINHLVRAKHKEVTLHKDGPLGETVLECYSCGCRNVFVLGFIP
AKADSVVVLLCRQPCAAQSSLKDMNWDPDQWKPLISDRSFLAWLVKIPQEQEQLRARQVS
AAQINKLEELWKDNVDASFEDLEKPGVDEEPQQVLLRYEDGYQYQNIFGPLVKMEADYDK
KLKESQTQDNIEVRWDIGLNKKMIAYFTIAKSDTDMRLMHGDELRLRYLGELHKPWFGVG
HVIKIPDNYSEEVGIEMKLNSNVPSECTSNFVVDFVWKSTSFDRMQSALRKFAVDETSVS
AYIYHKLLGHEVEDVVMRNQLPKHFSAPNLPELNRSQIFAVKHAMQRPLSLIQGPPGTGK
TVTSATIVYHLVRQNNGPVLVCAPSNIAVDQLTEKIHRTGLKVVRLCAKSREAISSPVSF
LALHNQIRNLEGHSELHKLQQLKDETGELSSADEKRYRTLKKACERELLEAADVICCTCV
GAGDPRLQKFKFYSILIDESMQATEPECMVPVVLGAKQLILVGDHCQLGPVVMCKKAARA
GLSQSLFERLVVLGIRPLRLEVQYRMHPQLSKFPSNFFYEGSLQNGVYAEERKMKGVDFP
WPQPDKPMFFYACQGQEEIAGSGTSYLNRTEASLVERLTTRFLKCSVKPEQIGIITPYEG
QRAYLVQYMQYNGSLHAKLYQDIEVASVDAFQGREKDLIIMSCVRSNEHQGIGFLNDPRR
LNVALTRARYGIIIVGNPKVLSKQTLWNHLLTFYKENKVLVEGPLNNLKESMIQFSKPRK
LTNSINPGSHFMNTAMYDAREAMIPGSVYDRSSHLNGGPAFYGRPHDQISYISPERAQSA
VANLPVPVGMFLNMAHIPPRFYNQHQQALQARQNQRNRNATRKGGGRQTNGRSMTNGTSM
NLSQGFNSQASQDMMGGFSQGPLTQGQLSMSQMSQPNYPGLSQPGLSQPELSQDTYLVDE
LRSQTEGMLSQDSTYQGDRAYFAASQGGQFSQPY
NT seq
3345 nt
NT seq
+upstream
nt +downstream
nt
atgagtgttgacgcttatgctcctactgcagaaacattgacttttttggaccctgaagag
ggtaatgatttattaggcgcagacacacaggggtctgattttgaatttacagatttttcg
ttggcttcccaaacccaggcttctcaactagatcagagtcagtctacaagaagtcagttg
aatggtcccgatttatccttgccaaatggattagacagagatgtatgcactgcaagccaa
ggtcttggagagttaaccttccaagaagaagaggaagatcagtactataccaaagactta
cctgaacatgcttgcaaatactgcggtatacatgatcctagttgtgttgttcagtgcaat
gtttgcaaacgatggttttgtaatggcagaggaaatacatccggaagccatatcataaat
catcttgtacgagctaagcataaggaagtaactcttcacaaagatgggcctttaggagaa
acagtattggaatgttatagctgtggctgtagaaatgtttttgttcttggatttattcct
gccaaagccgactcggttgttgttttattgtgtcgccagccatgtgcagctcagagcagc
ttgaaagatatgaattgggatcctgaccaatggaaacctcttattagtgatcgaagtttc
ttggcatggttagttaaaatacctcaggaacaagaacagttgcgggcacgtcaagttagt
gctgcacagattaataagctagaggagttgtggaaggataatgttgatgcatcatttgaa
gacttggaaaaacctggagttgatgaagaaccacagcaagtccttttaagatatgaggat
ggttatcaataccaaaatatttttgggccccttgtgaagatggaagctgattatgataaa
aaattgaaggagtcccaaactcaagataacattgaagtccgttgggatattggcttgaac
aaaaagatgatagcatatttcacgattgctaagtctgatacagatatgagattaatgcat
ggtgatgagttaagacttcgctatctgggtgaattgcacaagccttggtttggtgtggga
catgttattaaaattcctgacaactatagtgaagaagttggaatagaaatgaagttaaat
tcaaatgtaccctcggaatgcacttccaattttgttgttgattttgtctggaagtctaca
tcgtttgacaggatgcagtctgcattgcgtaaatttgctgtggatgaaacatcagtttca
gcatatatttatcataaattactggggcatgaagttgaagatgttgttatgcgaaatcag
ttacccaaacatttctcggctcctaatcttccagagttgaatagatcacaaatatttgct
gttaagcatgctatgcaaagaccactgtcgctaattcaaggaccaccaggtactggaaaa
actgttacatcagctacaattgtgtatcatttagttcgccagaataatggtccagttcta
gtctgtgctcctagtaatattgcagtagatcagttgactgagaaaatacatcgaactgga
ttaaaggttgtacgtttatgtgcaaaaagtcgtgaagcaattagttctccagtatctttc
ttggctttgcataaccaaatccgaaacttagaaggccattctgaactccataaactacag
caacttaaagatgaaactggtgaattgtcatctgctgatgaaaaacgttatcgaactctt
aaaaaggcttgtgaaagggagctcctggaggctgctgatgttatttgctgtacttgtgtt
ggtgccggagatcctcgtctccagaaatttaaattttattccattcttattgatgaaagc
atgcaggccactgaacctgagtgtatggttcctgttgttcttggtgcaaagcagttgata
cttgttggagatcattgccagctgggacctgttgtgatgtgcaagaaagcagctcgagct
ggactttcacagtctctttttgaaagattggtcgtcttgggaattaggcctcttagattg
gaagttcagtatcggatgcaccctcagctgagtaaatttccctctaactttttctatgaa
ggatcgcttcagaatggagtttatgctgaggagagaaaaatgaaaggagtagattttcca
tggccccagcctgataaacctatgtttttttatgcttgtcaaggacaggaagaaatagca
ggatctggaacttcatatttgaataggacagaagcatctcttgtagaaagactcactaca
aggtttttgaaatgtagcgttaaacctgagcagattggcattattacaccatatgaaggt
caaagagcttatttagtacagtacatgcaatacaatggctctctacatgctaaactgtat
caagatattgaagttgctagtgttgatgcattccaaggccgagaaaaagatttgattatc
atgtcatgtgttagatccaacgaacatcaaggaattgggttcttaaatgatcctcgtcgt
ttgaatgttgccttaacaagagccagatatggcataatcattgttggtaatcctaaagtt
ttgtcaaaacaaacattatggaatcatcttctgacattttataaggaaaataaagttctt
gtagaaggtcctttaaacaacttaaaggaaagcatgattcagtttagtaaacctaggaaa
cttaccaattccatcaatcctgggtcacacttcatgaatactgcaatgtatgatgccagg
gaagctatgataccaggcagtgtatatgatcgttcatctcatttgaatggaggtcctgca
ttttatggccgtcctcatgaccagatatcttacataagtcctgaaagagcacagagtgct
gtcgctaatctgccagtgccagttggtatgttcttgaatatggcacatataccaccccgt
ttctataatcagcatcagcaagctctgcaagctcggcagaatcaaaggaatcgaaatgcc
acaagaaaaggtggcggaaggcaaactaatgggcgttcaatgacaaatggaacatctatg
aatttatctcaaggtttcaacagtcaagcaagccaggacatgatgggagggttctcgcaa
ggtcctcttacacaaggtcagctgagtatgagtcagatgagtcaacccaattatccaggt
ctttctcaacctgggctctcccagccagagttatcacaagatacctatcttgtggatgaa
ttgcgctctcagactgaaggaatgctttctcaagactctacttaccaaggtgacagggcc
tactttgcagcatctcaaggtggccaattttctcagccatattga
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integrated database retrieval system
