Actinacidiphila bryophytorum: NYE86_06740
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Entry
NYE86_06740 CDS
T08584
Name
(GenBank) Rne/Rng family ribonuclease
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
abry
Actinacidiphila bryophytorum
Pathway
abry03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
abry00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
NYE86_06740
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
abry03019
]
NYE86_06740
03009 Ribosome biogenesis [BR:
abry03009
]
NYE86_06740
Enzymes [BR:
abry01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
NYE86_06740
Messenger RNA biogenesis [BR:
abry03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
NYE86_06740
Ribosome biogenesis [BR:
abry03009
]
Prokaryotic type
rRNA processing factors
NYE86_06740
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
FakA-like_C
DnaJ_CXXCXGXG
Motif
Other DBs
NCBI-ProteinID:
UWE08452
LinkDB
All DBs
Position
1597329..1601636
Genome browser
AA seq
1435 aa
AA seq
DB search
MRLSSAPARAADERHSSSRAAPAPRRAAPRSKRPAPSDLDAAPGSSTGALPECPTRPIRT
PPQPTPRRKPHRPAAGAPPPAPQAPAGAAAETDTTSDTGAAAAPEAAPARRRTRKTAATE
AAATDTAAETGETAAPARRRATRKAAAAPEAAAPAAEEAAADDAAPAPARRRATRKAAAP
APAAEETQAAEAAPEAASDDAAPARTRRRATRKAAAPAPAAEETEAVEAAPEAAAEDAAP
ARTRRRATRKAAAPAAAPEETTETAEEPASDDAAPARTRRRATRKAAAPAAAPEETTETA
EEPAADDAAPARTRRRATRKATAPAGSPAVADEAPAEADAPVEETAPAEDAAPARTRRRA
TRKATAPAGSPAVADEAPAEADAPVEETAGRTARRTRKKAAPAATFSASGGDGSRRLKPG
ALAPQAEAEASAAAGPATAYTGKALRDGDGWAVEVDDAYEIRGYGATPEDAAAQAVAALA
DAFGIAAESVTLDVRTEEAPVRGRRRVVQPPTAVFQPPVFGAAAPAPAAEEAEEAEPEAE
ADEHEGGSSRRRRRRRSGAAAEAVATEAAESAEAEAEEPEAEAEGDADGEDRPSSRRRRR
GGRRRRRGESAEHDESASGEDEDEDESQEGDEAESADEHEDEHPQGGGSGGSTSSRRRRR
RRRRGGDSGADDTHGGDVDDPERTVVKVREPRQNHEPLGAGADQVQSIKGSTRLEAKKQR
RREGREQGRRRVPIITEAEFLARREAVERVMVVRQNGERTQIGVLEDNVLVEHYVNKEQA
TSYVGNVYLGKVQNVLPSMEAAFVDIGKGRNAVLYAGEVNFEALGLSGGPRRIESALKSG
QPVLVQVTKDPIGHKGARLTSQVSLPGRYLVYVPEGSMTGISRKLPDTERARLKTILKKI
VPEDAGVIVRTAAEGASEDELRRDVERLQAQWDDIQRKAKSGGGSNAPTLLYGEPDMTVR
VVRDIFNEDFSKVIVSGDEAWGTIHDYVTHVAPDLADRLSRWTSEVDVFATYRIDEQLLK
ALDRKVWLPSGGSLVIDKTEAMVVVDVNTGKFTGQGGNLEETVTRNNLEAAEEIVRQLRL
RDLGGIVVVDFIDMVLESNRDLVMRRLLECLGRDRTKHQVAEVTSLGLVQMTRKRVGQGL
LESFSETCVHCNGRGVIVHMDQATTTGGGGGKRKRRGGKAAGGEHEHEHVADVEVETGAE
AEAEELPELEPIEVGESDLVPAVGDPEEEWFGSAAEAEAAATSSRGRSRRRGARKATAPA
GAPAAAAGEVEQAFVVVPVSEPDVEPLPEPEVSTEPPARTRRRATRKATAPAGSPAAAEE
AAVVVVAAEAPAPAAAALPEPEVSTEPPARTRRRATRKVAAPAGGDAEIVVAAATPVSAE
AEPAPASAEEGAEPKKRAARKAPAKKAAAKKTAKKAAAKKTTKKAAAKKSTAPAE
NT seq
4308 nt
NT seq
+upstream
nt +downstream
nt
atgagactttcgtcggcccccgcacgggcggccgacgagcgacacagcagctcccgtgcg
gcgcccgcgccccggagggcggccccgcgatccaagcggcctgccccctccgacctggac
gcggcgcccgggagctcgacgggagcactgcccgaatgcccgaccagaccgattcgcaca
ccaccgcagccgacaccccggcggaagccgcaccggcccgccgccggcgcgccgcctccc
gccccgcaggccccggccggcgccgccgcggaaaccgacaccaccagcgacaccggcgcc
gctgccgcgcccgaggccgcaccggcccggcgccgtacgcgcaagaccgcggccaccgag
gccgccgccaccgacaccgcagccgagaccggcgagaccgcggcgcccgcgcgccgccgc
gcgacccgcaaggccgccgcagcccccgaggccgcagcgcccgccgccgaggaagccgcc
gcggacgacgcggcaccggcacccgcccgccgccgcgccacccgcaaggccgcggccccc
gctccggccgccgaggagacgcaggccgcggaggccgcgcccgaggccgcctcggacgac
gccgctccggcccgtacccgccgccgcgcgacccgtaaggccgcagcccctgcgccggct
gccgaggagacggaggccgtggaggccgcgcccgaggccgctgctgaggacgctgctccg
gcccgtacgcgccgccgggcgacccgtaaggccgcggctccggccgccgcccccgaggag
acgaccgaaaccgccgaggagcccgcctcggacgacgcggccccggcccgtacccgccgt
cgcgctacccgtaaggccgcggctcccgctgccgcgcccgaggagacgaccgaaaccgcc
gaggagcccgccgccgacgacgcggcccccgcgcgtacccgccgccgtgccacccgtaag
gcgacggctcctgccggttcgcccgctgtcgcggacgaggctcccgccgaggcggatgcc
ccggtggaggagacggctcccgccgaggacgcggcccctgcgcgtacccgccgccgggcg
acccgtaaggcgacggctcctgccggttcgcccgctgtcgcggacgaggctcccgccgag
gcggatgccccggtggaggagacggcagggcgtacggcccggcggacccgtaagaaggcg
gcgcccgccgcgaccttctccgcctcaggcggcgacggatcgcgccggctcaagcccggt
gcactcgcgccccaggccgaggccgaggcgtccgcagctgcaggcccggcgaccgcgtac
accggcaaggcgctgcgcgacggcgacggctgggccgtcgaggtcgacgacgcctacgag
atccgcggctacggagccacccccgaggacgccgccgcccaggcggtggccgcgctcgcc
gacgccttcggcattgccgccgagtccgtgacgctggacgtgcgcaccgaggaggcgccc
gtacgcggccgccgccgggtcgtgcagccgccgaccgcggtcttccagccgccggtcttc
ggcgccgccgcgcccgcgcccgccgccgaggaggcggaggaggccgagcccgaggcggag
gccgacgagcacgagggcggcagctcgcgccgccgcaggcgccgcaggagcggtgccgcc
gcggaggccgtggccaccgaggcagccgagagcgccgaggcggaggcggaggagcccgag
gcagaggccgagggcgacgccgacggcgaggaccgcccgtcctcccggcgccgcaggcgc
ggcggccgtcgccgccgccgtggcgagtccgcggagcacgacgagagcgcgtccggtgag
gatgaggacgaggacgagtcgcaggaaggcgacgaggccgagtccgccgacgagcacgag
gacgagcacccgcagggcggcgggtccggcggcagcaccagcagccggcgcaggcgccgc
cgccgtcgccgcggtggcgactccggtgcggacgacacgcacggcggcgacgtggacgac
ccggagcgtacggtcgtcaaggtccgcgagccgcggcagaaccacgaaccgctcggcgcc
ggcgccgaccaggtgcagtccatcaagggctccacccgcctcgaagccaagaagcagcgc
cgccgcgaagggcgcgagcagggccgccgccgcgtcccgatcatcaccgaggccgagttc
ctggcccgccgcgaggcggtcgagcgcgtcatggtggtgcggcagaacggcgagcgcacc
cagatcggcgtgctggaggacaacgtcctcgtcgagcactacgtcaacaaggagcaggcc
accagctacgtcggcaacgtctacctgggcaaggtccagaacgtgctgccgtcgatggag
gccgccttcgtcgacatcggcaagggccgcaacgcggtgctctacgccggtgaggtcaac
ttcgaggcgctcggcctgtccggcggcccgcgccgcatcgagtccgcgctcaagtccggc
cagccggtgctggtgcaggtcaccaaggacccgatcgggcacaagggcgcccggctcacc
agccaggtcagcctgcccggccgctacctggtctacgtgcccgagggctcgatgaccggc
atcagccgcaagctgcccgacactgagcgcgcccggctcaagacgatcctgaagaagatc
gtccccgaggacgccggcgtcatcgtccgcaccgccgcggaaggcgccagcgaggacgag
ctgcgccgcgacgtcgaacgcctgcaggcccagtgggacgacatccagcgcaaggccaag
agcggcggcggctccaacgcgccgaccctgctctacggcgagcccgacatgaccgtccgg
gtcgtcagggacatcttcaacgaggacttctcgaaggtcatcgtcagcggcgacgaggcg
tggggcaccatccacgactacgtcacccacgtcgcacccgacctggccgaccggctgtcc
cgctggacctcggaagtggacgtcttcgcgacgtaccgcatcgacgagcagctgctcaag
gcgctcgaccgcaaggtgtggctgccctcaggcggctcgctggtgatcgacaagaccgag
gcgatggtcgtggtcgacgtcaacaccggcaagttcaccgggcagggcggcaacctggag
gagaccgtcacccgcaacaacctggaggcggccgaggagatcgtccgccagctgcggctg
cgcgacctcggcggcatcgtcgtcgtcgacttcatcgacatggtcctggagtccaaccgc
gacctggtcatgcgccggctgctggagtgcctgggccgcgaccgcaccaagcaccaggtc
gccgaggtcacctcgctcggcctggtccagatgacccgcaagcgggtcgggcagggcctg
ctggagtccttctccgagacctgcgtccactgcaacgggcgcggcgtcatcgtccacatg
gaccaggcgaccaccaccggcggaggcggcggcaagcgcaagcgccgcggcggcaaggcc
gcgggcggcgagcacgagcacgagcacgtcgcggacgtcgaggtggagaccggggcggag
gcggaagccgaggagcttcccgagctggagccgatcgaggtcggcgagtccgacctcgtc
ccggcggtcggcgaccccgaggaggagtggttcggcagcgccgccgaggccgaggccgca
gccacctcgtcccgcggccgcagccggcgccgcggcgcccgcaaggcgacggcccccgcc
ggggcgcccgccgccgcggcaggcgaggtcgagcaggccttcgtcgtcgtgccggtgagc
gagcccgacgtcgagccgctgcccgagcccgaggtctccacggagccgccggcccgtacg
cgccggcgggcgacccgcaaggccacggcacccgcgggctcgcccgcggccgcggaggag
gcggccgtcgtggtcgtcgccgccgaggcgcccgcccctgcggctgccgccctgcccgag
cccgaggtctccacggagccgccggcgcgtacgcgtcggcgggcgacccgcaaggtggcc
gctcccgcgggcggtgacgccgagatcgtcgtggccgcggccactccggtctccgccgag
gccgagcccgcgcccgcctccgcggaggagggcgccgagcccaagaagcgggcggcccgc
aaggcccccgccaagaaggcggcggcgaagaagacggccaagaaggcggcggcgaagaag
accacgaagaaggctgcggccaagaagtccacagcccccgccgaatag
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