Actinacidiphila bryophytorum: NYE86_09565
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Entry
NYE86_09565 CDS
T08584
Symbol
dnaE
Name
(GenBank) DNA polymerase III subunit alpha
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
abry
Actinacidiphila bryophytorum
Pathway
abry03030
DNA replication
abry03430
Mismatch repair
abry03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
abry00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
NYE86_09565 (dnaE)
03430 Mismatch repair
NYE86_09565 (dnaE)
03440 Homologous recombination
NYE86_09565 (dnaE)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
abry03032
]
NYE86_09565 (dnaE)
03400 DNA repair and recombination proteins [BR:
abry03400
]
NYE86_09565 (dnaE)
Enzymes [BR:
abry01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
NYE86_09565 (dnaE)
DNA replication proteins [BR:
abry03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
NYE86_09565 (dnaE)
DNA repair and recombination proteins [BR:
abry03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
NYE86_09565 (dnaE)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
tRNA_anti-codon
Motif
Other DBs
NCBI-ProteinID:
UWE08943
LinkDB
All DBs
Position
2234463..2238017
Genome browser
AA seq
1184 aa
AA seq
DB search
MIDQPFTHLHVHTQYSLLDGAARLKDMFKACNEMGMSHVAITDHGNLHGAYDFFHQAQAA
GVTPVMGIEAYLAPESRRYNKPVKWGAPHQKGDDVSGAGAYTHMTIWARNRVGLHNLFRA
QSRASFEGYFRKPRMDRELLSEYAEGLMGTTGCPSGEVSTRIRLGQMDEALKAASEYQDI
FGKENFFVEIMDHGIDIDRRARDGLMEISKKLKAPFVVTNDSHYTYAGESSAHDTLLCIQ
TGSNMSDPDRFKFDGSGYYLKSAAEMYAIDSSDAWQEGCRNSQLLIADRVDTEGMFQFRN
LMPKFDVPEGYTEVTWFREEVARGMARRFPGGIPEDRQKLADYEMDTIVQMGFPGYFLVV
ADFIMWAKNNGIAVGPGRGSAAGSIVAYAMGITDLDPVPHGLIFERFLNPERISMPDVDI
DFDERRRGEVIRYVTEKYGSDKVAQIATYGTIKAKAAIKDSARVLGYPFSMGDRITKAMP
ADVLGKGIPLSGITDKDHPRYSEAGEVRAMYENEPDVTKVINSAKGIEGLVRQMGVHAAG
VIMSAEPLIDHVPIFSPKNDGAVVTQWDYPSCESLGLLKMDFLGLRNLTIMDDAVKSIKA
NKGIDIDLLALPLDDPNTYALLGRGDTLGVFQFDGGPMRALLRMMKPDNFEDISAVSALY
RPGPMGMNSHINYALRKNKQQEITPIHKELEEPLREVLEVTYGLIVYQEQVQKAAQVLAG
YSLGQADLLRRAMGKKKKEVLDKEFIPFQAGMRERGYSDQAIQAVWDVLVPFAGYAFNKA
HSAAYGLVSYWTAYLKANYPAEYMAGLLTSVKDDKDKMALYLNECRRMGIKVLPPDVNES
NANFTPRGDDTIVFGLTAVRNVGQNVVESVVRCRKAKGRYGSFPDFLDKVEVVVCNKRTV
ESLIKAGAFDTMKHTRRGLTEHFESMIDNVVQVKRKEAEGQFDLFGGMGDDDADDSPAFG
MDVVFSDIEWDKTYLLAQEREMLGLYVSDHPLFGIEHILGDKTDAAIAALAGDYQDGAIV
TIGGIISGLQRKMTKQGNAWAIATVEDLAGSVDCMFFPATYQLVSTQLMEDAVVFVKGRL
DKREDIPRLVAMELMVPDLTDVGTNAPVSISIPTVKVTPPLVARLGEVLDSHKGNTEVRV
RLQGVRSTTVLRLDRHRVTADPSLFGDLKALLGPACLGAGQQAG
NT seq
3555 nt
NT seq
+upstream
nt +downstream
nt
ttgatcgatcagcccttcactcacctgcacgtccacacccagtattcgctgctggacggg
gcggcgagactgaaggacatgttcaaggcgtgcaacgagatggggatgagccatgtggcc
atcaccgatcacggcaacctgcacggcgcctacgacttcttccaccaggcccaggcggcc
ggggtgaccccggtgatgggcatcgaggcgtatctggcgcccgagtcgcggcggtacaac
aagccggtcaagtggggcgccccgcaccagaagggcgacgacgtctccggcgcgggcgcg
tacacgcacatgacgatctgggcgcgcaaccgggtcgggctgcacaacctcttccgcgcc
cagtcccgcgcgtccttcgagggctacttccgcaagccccggatggaccgcgagctgctc
agcgagtacgccgagggcctgatgggcaccaccggctgcccgtccggcgaggtgtccacc
cggatcaggctcgggcagatggacgaggcgctcaaggccgcctccgaataccaggacatc
ttcggcaaggagaacttcttcgtcgagatcatggaccacggcatcgacatcgaccgcagg
gccagggacggcctgatggagatctcgaagaagctcaaggcgccgttcgtggtcaccaac
gactcgcactacacctatgccggggagtcgtccgcgcacgacaccctgctgtgcatccag
accgggtccaacatgtcggacccggaccgcttcaagttcgacggctccggctactacctc
aagtccgctgccgagatgtacgcgatcgactcctccgacgcctggcaggagggctgccgc
aacagccagctgctgatcgccgaccgggtcgacaccgagggcatgttccagttcaggaac
ctgatgcccaagttcgacgtgcccgagggctacaccgaggtcacctggttccgcgaggag
gtcgcccgcggcatggccaggcgcttccccggcggcatccccgaggaccggcagaagctc
gccgactacgagatggacaccatcgtccagatgggcttccccgggtacttcctggtggtc
gccgacttcatcatgtgggcgaagaacaacggcatcgcggtcggccccggccgcggctcc
gcggccggctcgatcgtcgcgtacgcgatgggcatcaccgacctcgacccggtcccgcac
gggctgatcttcgagcggttcctgaaccccgagcgcatctccatgcccgacgtcgacatc
gacttcgacgagcgtcggcgcggcgaggtcatccgctacgtgacggagaagtacggctcc
gacaaggtcgcccagatcgccacctacggcaccatcaaggccaaggccgcgatcaaggac
tcggcccgggtgctgggctacccgttctcgatgggcgaccggatcaccaaggcgatgccc
gccgacgtcctcggcaagggcatcccgctgtccggcatcaccgacaaggaccacccccgc
tacagcgaggcgggcgaggtccgggcgatgtacgagaacgagccggacgtcaccaaggtc
atcaactcggccaagggcatcgagggcctggtccggcagatgggcgtgcacgcggccggc
gtgatcatgtccgccgagccgctgatcgaccacgtgccgatcttctcgccgaagaacgac
ggcgccgtcgtgacccagtgggactaccccagctgcgagtcgctcggcctgctcaagatg
gacttcctgggcctgcgcaacctgacgatcatggatgacgcggtcaagtcgatcaaggcc
aacaagggcatcgacatcgacctgctcgcgctgccgctggacgaccccaacacctacgcc
ctgctgggccgcggcgacaccctgggcgtcttccagttcgacggcggccccatgcgcgcc
ctgctgcggatgatgaaaccggacaacttcgaggacatctccgccgtctcggccctctac
cggcccggccccatgggcatgaactcgcacatcaactacgcactgcgcaagaacaagcag
caggagatcaccccgatccacaaggagctggaggagccgctccgcgaggtccttgaggtc
acctacggcctgatcgtctaccaggagcaggtgcagaaggccgcccaggtgctggccggc
tactcgctgggccaggccgacctgctgcgccgggcgatgggcaagaagaagaaggaggtc
ctggacaaggagttcatccccttccaggccggcatgcgcgagcgcggctactccgaccag
gccatccaggcggtctgggacgtgctggtgcccttcgccggatacgccttcaacaaggcg
cactcggccgcgtacggcctggtgtcgtactggaccgcctacctcaaggcgaactacccg
gccgagtacatggcgggcctgctgacgtccgtgaaggacgacaaggacaagatggcgctc
tacctcaacgagtgccgccggatgggcatcaaggtgctgccgccggacgtgaacgagtcc
aacgccaacttcaccccgcgcggcgacgacacgatcgtcttcggcctcaccgcggtccgc
aacgtcgggcagaacgtggtggagtccgtcgtcaggtgccgcaaggccaagggccgctac
ggcagcttccccgacttcctcgacaaggtcgaggtcgtggtctgcaacaagcggaccgtc
gagtcgctgatcaaggccggcgccttcgacaccatgaagcacaccaggcgcggcctgacc
gagcacttcgagtcgatgatcgacaacgtggtgcaggtcaagcgcaaggaggccgagggg
cagttcgacctcttcggcggcatgggcgacgacgacgcggacgacagcccggccttcggc
atggacgtggtcttctccgacatcgagtgggacaagacgtatctgctcgcgcaggagcgg
gagatgctcggcctgtacgtgtccgaccacccgctgttcggcatcgagcacatcctcggc
gacaagaccgacgccgccatcgccgcgctggccggcgactaccaggacggcgccatcgtc
accatcggcggcatcatctccggcctgcagcgcaagatgaccaagcagggcaacgcctgg
gccatcgccaccgtcgaggacctggcgggctcggtggactgcatgttcttcccggcgacc
taccagctggtgtccacccaactgatggaggacgcggtcgtcttcgtcaaggggcggctg
gacaagcgcgaggacatcccgcggctggtcgccatggagctgatggtgcccgacctgacc
gacgtcggcaccaatgcgccggtgagcatctccatcccgacggtcaaggtcaccccgccg
ctggtggccaggctcggcgaggtgctggacagccacaagggcaacaccgaggtgcgggtg
cggctgcagggcgtgcgctccaccacggtgctgcggctcgaccggcaccgggtgaccgcc
gatccctcgctcttcggcgacctcaaggcgctgctggggcccgcgtgcctgggcgcgggg
cagcaggcgggctga
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