Actinacidiphila bryophytorum: NYE86_32315
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Entry
NYE86_32315 CDS
T08584
Name
(GenBank) RtcB family protein
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
abry
Actinacidiphila bryophytorum
Brite
KEGG Orthology (KO) [BR:
abry00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
abry03016
]
NYE86_32315
Enzymes [BR:
abry01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
NYE86_32315
Transfer RNA biogenesis [BR:
abry03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
NYE86_32315
Prokaryotic type
tRNA splicing ligases
NYE86_32315
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
Motif
Other DBs
NCBI-ProteinID:
UWE12906
LinkDB
All DBs
Position
complement(7492577..7493770)
Genome browser
AA seq
397 aa
AA seq
DB search
MSYTEVPGARVPIRMWTDPSTVDDGAMQQLRNVATLPWIKGLAVMPDVHYGKGATVGSVI
AMHGAVCPAAVGVDIGCGMSAVKTSLTANDLPGDLSRLRTRIEQSIPVGRGLHRDPLEPG
SFFGLKTTGWDDFWSRFDGVADEVRFRRERAAQQLGTLGSGNHHIELSLDEDGAVWLTLH
SGSRNIGKELAEFHIGEAQKLPHNQGLVDRDLAVFVSDTPQMAAYRRDLYWAQEYAKWNR
TLMMTLFKDVVRRELKKARPTFEPEISCHHNYVAEERYDGMDLLVTRKGAIRAGTGDLGI
IPGSMGTATYIVRGLGNTAAFNSASHGAGRKMSRSAAKRRFTTRDLENQTRGVECRKDSG
VVDEIPGAYKSIETVMSQQRDLVEVVAKLKQAICVKG
NT seq
1194 nt
NT seq
+upstream
nt +downstream
nt
atgtcgtacacagaagtgcccggagcccgggtcccgatccgcatgtggaccgacccgtcc
accgtcgacgacggcgcgatgcagcagctgcgcaacgtcgccacgctgccctggatcaag
ggcctcgccgtgatgcccgacgtccactacggcaagggcgccacggtcggctccgtcatc
gccatgcacggcgccgtctgcccggcggcggtcggcgtcgacatcggctgcggcatgagc
gcggtgaagacctccctgaccgccaacgacctcccgggcgacctctcccgcctccgcacc
cgcatcgaacagtccatcccagtaggccgcggcctccaccgcgacccgctcgaaccgggc
agcttcttcggtctgaagacgaccggctgggacgacttctggtcccggttcgacggggtg
gccgacgaggtgcgcttccgccgtgagcgggccgcccagcagctgggcacgctcgggtcg
ggaaaccaccacatcgagctgtccctcgacgaggacggcgctgtgtggctgaccctgcac
tcgggctcgcggaacattggcaaggaactggccgagttccacatcggcgaggcgcagaag
ctcccgcacaaccagggcctggtcgaccgcgacctcgcggtcttcgtgtcggacaccccg
cagatggcggcctaccggcgggacctgtactgggctcaggagtacgcgaagtggaaccgc
acgctcatgatgaccctgttcaaggacgtcgtccgccgtgagctgaagaaggccaggccg
acgttcgaaccggagatctcctgccaccacaactacgtggccgaggagcgctacgacggc
atggacctgctggtcacccgcaagggtgcgatccgcgccggcaccggtgacctcggcatc
atcccgggctcgatgggtacggcgacctacatcgtgcgcggtctcggcaacaccgcggcc
ttcaactcggcctcgcacggggccgggcgcaagatgagccgcagcgcggccaagcggcgc
ttcaccacccgcgacctggagaaccagacccgcggtgtcgagtgccgcaaggactcggga
gtggtggacgagatcccgggcgcgtacaagtccatcgagacggtgatgagccagcagcgc
gacctggtcgaggtggtggccaagctcaagcaggccatctgcgtcaagggctga
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