Azospirillum baldaniorum Sp245: AZOBR_140180
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Entry
AZOBR_140180 CDS
T02152
Symbol
mfd
Name
(GenBank) transcription repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
abs
Azospirillum baldaniorum Sp245
Pathway
abs03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
abs00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
AZOBR_140180 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
abs03400
]
AZOBR_140180 (mfd)
Enzymes [BR:
abs01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
AZOBR_140180 (mfd)
DNA repair and recombination proteins [BR:
abs03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
AZOBR_140180 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
Helicase_C
DEAD
UvrB_inter
CarD_TRCF_RID
ResIII
Cas3-like_C_2
MFD_D3
SecA_DEAD
UB2H
AAA_22
DUF4410
RecG_dom3_C
ERCC3_RAD25_C
Motif
Other DBs
NCBI-ProteinID:
CCC98450
UniProt:
A0A9P1NMB3
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All DBs
Position
2049493..2053047
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AA seq
1184 aa
AA seq
DB search
MTPASSPTSPSERGAPDSSTSRSTTPAPPRLAEALAFFAPSLEVQVFPAWDCLPYDRVSP
NGGIVAKRIDTLTRLLARKADAAPLVVLTTVNAMVQKVPPRAAFRDAVFSAKLRDRIDLE
KLQRYLAGNGYTRAQTVREPGEFAVRGGIVDLFPPGTDEPLRLDLFGDELEAVRSFDPMS
QRTTDKRDGIDLKPMSEVFLDEAGIARFRSGYRELFGAVTDDDPLYEAISAGRKYGGMEH
WLPLFHETMESLLAYMPKAILSLDHQATEARDSRIAQVVDFHASRESMIVIEKRTGSPVY
KPVPVGMMFLDAQAWDDLFAAHAVAQLQPFGTPPGIKGTLDAGGRRGHDFAEERARPDVN
VFEAVKDHIRALRADGRRVLVAGYSAGSRDRLMTVLGDHGIPGLEPAESIEDVRRFDRNI
IGMIVLGMEHGFTSADMAVITEQDILGDRLVRPAAKKKRKAANFIAEYTALASGDLVVHM
DHGIGRYDGLETLEVSGAPHDCLRLIYEGGDKLYVPVENIEVLTRYGSEDAHAQLDKLGG
AGWQGRKARVKKRLKDMAEALLKIAAERMLKKADPVYTPEGVYQEFAARFPYPETDDQLK
VIEEVFTDLGSGRPMDRLVCGDVGFGKTEVALRAAFLVAMSGQQVAVVVPTTLLARQHFK
TFTTRFAGLPLRIVQLSRMVTAKEQTKVKQELTEGTADIVIGTHALLGKGVQFKQLGMVI
VDEEQHFGVKQKERLKELRADVHVLTLTATPIPRTLQMALSGVRELSLIATPPVDRLAVR
TFVLPYDPVVVREAILREHYRGGQTFYVCPRVEDLPKVAERVRELVPEVKIVTAHGQMPA
SELEEVMTAFDEGKFEVLLATNIIESGIDIPNANTLIVHRADMFGLAQLYQIRGRVGRSK
VRGYAYLTYAPNKPLTGTAQQRLHVIETLDSLGAGFQLASHDMDIRGAGNLLGEEQSGHV
KEVGVELYQHMLEEAVANARAGMDGQVPSGAEDQPWTPQINLGTPVLIPEEYVPDLTVRL
SLYRRIADLVDRAEIDGFAAELIDRFGKLPGEVENLLDVVTIKQLCRQAGVERVDAGPKG
AVLTFRNNSYAEPAKLLTYISQQISLMKLRPDHKLVYTREWADEAQRVRGVNRLMSDLAQ
MAGGGAVPKGEAPPPPPPPPPRPSALKAGSKFGRNIPSRPFGRR
NT seq
3555 nt
NT seq
+upstream
nt +downstream
nt
atgacgcccgcgtcctcgccgacctcgccaagcgagcggggagcgccggactcctccacg
tcgcgctcgacgacacccgcgccgcccaggctggcggaggcgctggccttcttcgcgcct
tcgctggaggtgcaggtgttcccggcctgggactgcctgccctacgaccgggtgtcgccc
aacggcggcatcgtggcgaagcgcatcgacacgctgacccgcctgctggcgcgcaaggcg
gacgccgcgccgctggtcgtgctgaccaccgtcaacgccatggtgcagaaggtgccgccc
cgcgccgctttccgcgacgcggtgttctcggcgaagctgcgcgaccggatcgatctggag
aagctgcagcgctatctggccggcaacggctacacccgcgcccagacggtgcgcgagccg
ggcgagttcgccgtgcgcggcggcatcgtcgatctgttcccgccgggcaccgacgagccg
ctgcgcctcgacctgttcggcgatgagctggaggccgtgcgcagcttcgaccccatgtcg
caacgcaccaccgacaagcgcgacggcatcgacctgaagccgatgtcggaagtcttcctc
gacgaggccggcatcgcccgcttccgctccggctaccgggagctgttcggcgccgtcacc
gacgacgacccgctctacgaggcgatcagcgccgggcgcaagtacggcggcatggagcac
tggctaccgctgttccacgagacgatggaatcgctgctggcctacatgcccaaggccatc
ctgtcgctggaccatcaggcgacggaggcgcgcgattcgcgcatcgctcaggtggtggac
ttccacgcctcccgcgagagcatgatcgtcatcgagaagcggacgggctcgccggtctac
aagccggtgccggtcggcatgatgttcctcgacgcccaggcctgggacgacctgttcgct
gcccacgccgtggcgcagctccagcccttcggcacgccgccgggcatcaagggcacgctg
gacgccggtgggcgccgcggccatgacttcgccgaggagcgggcgcgccccgacgtcaac
gtcttcgaggcggtgaaggaccacatccgcgcgttgcgggccgacgggcggcgcgtgctg
gtggccggctattccgcgggctcccgcgaccgtctgatgacggtgctgggcgaccacggc
attccggggctggagccggcggagagcatcgaggacgtccgccgcttcgaccgcaacatc
atcggcatgatcgtgctggggatggagcacggcttcacctccgccgacatggccgtcatc
accgagcaggacatcctcggcgaccgcctcgtccgcccggcggcgaagaagaagcgcaag
gccgccaacttcatcgccgaatacacggcgctggcctcgggcgacctcgtggtgcacatg
gaccacggcatcgggcgctacgacgggttggagacgcttgaggtgtccggcgcgccgcac
gactgcctgcggctgatctacgaggggggcgacaagctctacgtccccgtcgagaacatc
gaggtgctgacccgctacgggtcggaggacgcgcacgcgcagctcgacaagctgggcggg
gccggctggcagggccgcaaagcccgcgtcaagaagcgcctgaaggacatggccgaggcg
ctgctgaagatcgccgccgagcgcatgctgaagaaagccgatccggtctacacgccggag
ggcgtctatcaggaattcgccgcgcgcttcccctatccggagaccgacgaccagctgaag
gtgatcgaggaggtcttcaccgacctcggctcgggccgtccgatggaccggctggtctgc
ggcgacgtcggcttcggcaagacggaggtggcgctgcgcgccgccttcctcgtcgccatg
agcggccagcaggtcgccgtggtggtgccgaccacgcttctggcgcggcagcacttcaag
accttcaccacccgcttcgcggggctgccgctgcgcatcgtccagctctcccgcatggtc
accgccaaggagcagaccaaggtcaagcaggagctgacggagggcactgccgacatcgtc
atcggcacccacgcgctgctcggcaagggcgtgcagttcaagcagctcggcatggtcatc
gtcgacgaggagcagcatttcggcgtgaagcagaaggagcggctgaaggagctgcgcgcc
gacgtgcatgtcctgacgctgaccgccacgccgatcccgcgcacgctccagatggcgctg
tccggcgtgcgtgagctgtcgctgatcgccaccccgccggtggaccgcttggcggtgcgc
acctttgtgctgccctacgacccggtggtggtgcgcgaggccatcctgcgcgagcattac
cggggcggccagaccttctacgtctgccctcgcgtggaggacctgcccaaggtcgccgag
cgggtgcgcgagctggtgcccgaggtgaagatcgtcaccgcccacggccagatgcccgcc
agcgagctggaggaggtgatgaccgccttcgacgagggcaagttcgaggtgctgctcgcc
accaacatcatcgagagcggcatcgacattcccaacgccaacacgctgatcgtgcaccgg
gcggacatgttcggcctggcgcagctctaccagatccgcgggcgcgtcggccgctcgaag
gtgcgcggctacgcctacctcacctacgcgccgaacaagccgctgaccggcacggcacag
cagcggctgcacgtcatcgagacgctggacagcctgggcgccggcttccagctggccagc
cacgacatggacatccgcggcgccggcaacctgttgggcgaagagcagtcgggccacgtc
aaggaggtcggcgtcgagctgtaccagcacatgctggaggaggccgtcgccaacgcccgc
gccggcatggacgggcaggtgccgagcggcgcggaggaccagccctggaccccgcagatc
aacctgggcacgccggtgctgatcccggaggagtatgtccccgacctgacggtgcgcctg
tcgctctaccgccgcatcgccgatctggtggaccgggcggagatcgacggcttcgcggcg
gagttgatcgaccgttttggcaagctgccgggcgaggtggagaacctgctcgacgtggtg
accatcaagcagctctgccgtcaggcgggggtggagcgggtggacgccgggccgaagggc
gccgtgctgactttccgcaacaacagctacgccgagccggccaagctgctgacctacatc
agccagcagatcagcctgatgaagctgcggcccgaccacaagctggtctacacgcgcgaa
tgggccgacgaggctcagcgggtgcgtggtgtcaaccggctgatgagcgatctggcgcag
atggccggcggcggcgccgtgccgaagggcgaggcgccgcctcctccgccacccccgccg
ccgcgccccagcgcgctgaaggccgggtcgaagttcgggcggaacatcccctcgcgtccc
ttcgggcggcgctga
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