Azospirillum baldaniorum Sp245: AZOBR_200225
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Entry
AZOBR_200225 CDS
T02152
Symbol
rhlE
Name
(GenBank) ATP-dependent RNA helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
abs
Azospirillum baldaniorum Sp245
Pathway
abs03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
abs00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
AZOBR_200225 (rhlE)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
abs03019
]
AZOBR_200225 (rhlE)
Enzymes [BR:
abs01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
AZOBR_200225 (rhlE)
Messenger RNA biogenesis [BR:
abs03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
AZOBR_200225 (rhlE)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
Utp25_C
HEM4
SUa-2TM
ERCC3_RAD25_C
Motif
Other DBs
NCBI-ProteinID:
CCC99520
UniProt:
A0A9P1JTJ9
LinkDB
All DBs
Position
3019655..3021091
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AA seq
478 aa
AA seq
DB search
MTEFSGLGLIEPLLRAVAEEGYQTATPIQAGAIPVLLEGRDVLGLAQTGTGKTAAFTLPI
LQRLFQNKKRVQAKAPRTLILTPTRELALQIGESFRTYGRHLPIRRTVIHGGVGQSPQVA
ALARGTDVLVATPGRLLDLMAQKQCVLDQVEIFVLDEADRMLDMGFIRDVRKVVAVLPKQ
RQTLLFSATMPEAVVELAHSILTDAERIEVAPQSTTVERIAQRVLFVDRADKRRLLADLL
QEGAMERTIVFARTKHGADRIADHLKKAGVPADAIHGDKSQSARVRALESFRSGDLKALV
ATDIAARGIDIDGITHVINFDLPNEPESYVHRIGRTARAGTDGSAVSFCDAEEVAYLKAI
EKTIRQPVPADHDHPYHASVVAAIHASSAKPPKPAPKQPRPGRGQPQQQPGGGKPQGQRA
QAPKAQSAKPQAPQGARVAGATGDQPLKAKVSANQQNRHNRRPAPHGGQPGGNKRSAA
NT seq
1437 nt
NT seq
+upstream
nt +downstream
nt
atgaccgaattcagtggcctcggcctgatcgagccccttctgcgcgccgtcgccgaagag
ggttaccagaccgccacgccgatccaggccggcgccatccccgttcttctggagggccgc
gacgtgctcggcctcgcccagaccggcaccggcaagaccgccgccttcaccctgccgatc
ctgcagcggctgttccagaacaagaagcgcgtgcaggccaaggcgccgcgcacgctgatc
ctgacgccgacgcgcgagctggcgctgcagatcggcgagagcttccgcacctacggccgg
cacctgccgatccgccgcacggtgatccacggcggcgtcgggcagagcccgcaggttgcc
gctctggcccgcggcaccgacgtgctggtggcgactccgggccgcctgctggacctgatg
gcccagaagcagtgcgtgctcgaccaggtcgagatcttcgtcctggatgaggccgaccgc
atgctcgacatgggcttcatccgcgacgtgcggaaggtggtcgcggtcctgccgaagcag
cgccagaccctgctgttctccgccaccatgccggaagccgtggtcgagctggcacacagc
atcctgaccgacgccgagcggatcgaggtggcgccccagtccaccacggtggagcgcatc
gcccagcgtgtgctgttcgtggaccgcgccgacaagcgtcgcctgctcgccgacctcctc
caggagggtgccatggagcggacgatcgtcttcgcccgcaccaagcacggcgccgaccgc
atcgccgaccatctgaagaaggccggcgttcctgccgacgcgatccacggcgacaagtcg
cagtcggcccgcgtgcgtgcgctggagtccttccgcagcggcgacctgaaggcgctggtg
gcgaccgacatcgcggcgcgcggcatcgacatcgacggcatcacgcacgtcatcaacttc
gacctgccgaacgagccggaaagctacgtccaccgcatcggccgcaccgcccgcgccggc
accgacggcagcgcggtgtccttctgcgacgccgaggaggtggcctatctgaaggccatc
gagaagaccatccgccagccggtcccggcggaccacgaccatccctaccacgcgtcggtg
gtggcggcgatccacgcctcttcggccaagccgccgaagccggcgcccaagcagccccgt
ccgggccgcggccagccgcagcagcagccgggcggcggcaagccgcagggccagagggct
caggcgccgaaggcccagagcgcgaagccgcaggcgccgcagggcgcacgggttgccggc
gccaccggcgaccagccgctgaaggccaaggtgtcggccaaccagcagaaccgccacaac
cgccgccccgccccgcatggcggccagccgggcgggaacaagcggtccgcggcctga
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