Amedibacterium intestinale 9CBEGH2: A9CBEGH2_09700
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Entry
A9CBEGH2_09700 CDS
T06427
Symbol
rnj
Name
(GenBank) ribonuclease J
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
absi
Amedibacterium intestinale 9CBEGH2
Pathway
absi03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
absi00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
A9CBEGH2_09700 (rnj)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
absi03019
]
A9CBEGH2_09700 (rnj)
Messenger RNA biogenesis [BR:
absi03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
A9CBEGH2_09700 (rnj)
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
RNase_J_C
RMMBL
Lactamase_B
Lactamase_B_2
Peptidase_M4_C
DUF4453
Motif
Other DBs
NCBI-ProteinID:
BBK62030
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Position
952594..954420
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AA seq
608 aa
AA seq
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MNTNHNKKMHAPRTHQEYNKDSYNKMNIERGDTLVYAMGGLGEVGKNMYCFEHENEILIV
DAGVRFPEDNLLGVDYVIPDYNHLVKNSKKRKVLVITHGHEDHIGGIPFLLKTIDIEAIY
APAFAIALINKKLEERRMRGVKLIEINDRSSVKMKYFTIGFFNTTHSIPDSLGILINTPN
GRVVHTGDFKFDLTPVGGNADYQVMAYMGQIGVDLLMSDSTNSGVEDFSISEKKVASEIL
DIMRKTRGRLIVATFASNVYRVSQILDAAVACGRKIIIFGRSMENVVTIGRKLGKIKVGE
QHFLSPEELPHTPAHKICIVCTGSQGEPLAALSRIANGTHRYIKLIPGDTVVFSSSPIPG
NGASVNQVVNKLFKAGANVLTKSILSNLHTTGHASQEEQKLMLQLIKPKYFMPIHGEYKM
LKQHKETAIETGIPSENIFTCANGDVLILRKHKVYPSSFRIQADDIYVDGNDISGVSTAV
LKDRTILADNGLVSVIIAIDSRENKVLCKPVIVSRGFVFIKDSQGLLKEAEMIVYNALNE
KMKQKTTFSELKNCVRSTLEPYLYNKTHRNPIVIPVIINSKAAMQAMAARANRSTSNRKR
SVSKQVHE
NT seq
1827 nt
NT seq
+upstream
nt +downstream
nt
atgaacacaaatcataacaaaaaaatgcacgcaccgagaacacatcaggaatataataaa
gacagttataataaaatgaatatcgaacgtggagatactcttgtatatgcaatgggagga
ctaggcgaagtcggtaagaatatgtactgctttgaacatgaaaacgagattttaatcgtt
gatgcaggtgttcgttttcctgaagataatctgctcggtgtagattatgtcattccagat
tataatcatctggttaaaaatagtaaaaaaagaaaagtactggtcattacacatggacat
gaagatcatattggaggtattcccttcctgttaaaaacaatagatattgaggcaatttat
gcacctgcatttgcaattgctttaattaacaaaaagctggaagaaagaagaatgcgtggc
gttaagcttattgaaattaacgatcgcagttctgtcaaaatgaaatatttcacgataggc
ttctttaatactacacattccattcctgattcattaggaatcttgatcaatactccaaat
ggacgtgtcgttcatacaggtgattttaagtttgatttgaccccggttggcggaaatgct
gactatcaggttatggcttatatgggacaaattggtgttgacttattaatgagtgattct
acaaactctggtgttgaagatttctctatctctgaaaagaaagtagcttcagagatttta
gatatcatgagaaaaaccagaggcagacttatcgttgcaacttttgccagcaacgtatat
cgagtttcacaaattcttgatgcagctgttgcctgtggaagaaaaattattatatttggt
agaagcatggaaaatgttgttaccattggaagaaaattaggaaaaattaaagtcggagag
cagcactttttaagtcctgaggaattaccacacacacctgcacataaaatctgtattgtg
tgcactggtagtcagggggagcctttagctgcattatcccgtattgcgaatggaactcat
cgttatatcaaactgattcctggagatactgttgttttctctagttcccctattcctggc
aatggtgccagtgtaaatcaagttgttaacaaattgtttaaagcaggggcaaatgtttta
acaaaatctattttaagtaatctgcatacaacagggcatgcatctcaagaagaacagaag
ttgatgttacagctaatcaagccaaagtattttatgcctatacatggagaatacaaaatg
ttaaaacagcataaagaaactgcgattgaaacaggaattccaagtgaaaatatctttacc
tgtgcaaatggcgatgtacttattttaagaaaacacaaagtatatcctagcagtttccgc
attcaggcagatgatatttatgttgatggaaacgatattagcggagtttccactgctgta
ttaaaagatcgtacaatcttagctgataatggtcttgtttctgttattatcgctattgat
tccagagagaataaagtcttatgcaaacctgtcatcgtttctcgtggatttgtctttatc
aaagatagccaggggttattaaaagaagcagagatgattgtttacaatgctttaaatgaa
aaaatgaaacaaaaaacaaccttctctgaacttaaaaattgtgtaagaagtactttagaa
ccttacttatacaataaaacccatcgaaatccaatcgttattcctgtcattattaattca
aaggcagctatgcaggcgatggccgcaagagcaaatcgctctacatcaaatcgaaaaaga
tccgtatcgaaacaggtacatgaatag
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