Aliarcobacter butzleri ED-1: ABED_0957
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Entry
ABED_0957 CDS
T01823
Name
(GenBank) RNA polymerase sigma factor RpoD
KO
K03086
RNA polymerase primary sigma factor
Organism
abt
Aliarcobacter butzleri ED-1
Pathway
abt02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
abt00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
ABED_0957
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
abt03021
]
ABED_0957
Transcription machinery [BR:
abt03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
ABED_0957
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_r3
Sigma70_r2
Sigma70_r4
Sigma70_r1_2
Sigma70_ner
Sigma70_r4_2
FliG_M
Motif
Other DBs
NCBI-ProteinID:
BAK70674
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Position
complement(979408..981288)
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AA seq
626 aa
AA seq
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MSVKDINKTIELLVKEYKDSVLTYEKIIKIFPKAPSGPTIKKLLALIQLYNVTVISSQEQ
AKRMNDEEAKKKKELREKLIENEDDVFDLLKNKELLEWSRSDSPVRMYLREMGQIPLLTK
EEEVEISKKIETGEDIILDAICYVPYLIDFILEYREPLVNRERKVKELFKNFDDDTEEEE
DDFDSEDLEEEDSEEESFEDDEEKVSGKKQKKLDKRAQTIIEAFKNLEKAKKEWLKFQAK
ETSKSDEESDLMTFNLATAFKKRLLKEALLDLGPTSKLITEIVKAMETALKSDTGFDSEL
KRLEYKLPLFNETLQKNHQKILDNIVNLSKAQITAMVPEATMVSTYMEIKKLFQTAEASK
DGFDLTPEELKAVLEQIKRGKQITDTSKTRMAKSNLRLVVSIAKRYTNRGLPFLDLIQEG
NIGLMKAVDKFEYKKGYKFSTYATWWIRQAISRAIADQARTIRIPIHMIETINRINKIIR
KGVQENGKEPDIEEIAKEVGLPVDKVKQVIKITKEPVSLEAPIGSDEDGKFGDFVPDEKA
PTPIDNIMKEDLQGQIDQILSQLNEREQAVIRMRFGLMEDASDRTLEEIGKELNVTRERV
RQIESSAIKKLKHPKVGKNLKNYVES
NT seq
1881 nt
NT seq
+upstream
nt +downstream
nt
atgagcgtgaaagatataaataaaactattgaacttcttgtaaaagagtacaaagactca
gttttaacttatgaaaaaattattaaaatttttccaaaagcaccttctggtccaactatt
aaaaaacttttagcactaattcaattatataacgtaacggttattagttcgcaagaacaa
gcaaaaagaatgaatgatgaagaagctaaaaagaaaaaagaattaagagaaaaacttatt
gaaaatgaagatgatgtttttgacttattaaaaaataaagagctacttgaatggtcaaga
tctgattctcctgttagaatgtatttaagagaaatgggacaaatcccacttttaacaaaa
gaagaagaagttgaaatatcaaaaaaaatcgagactggtgaagatattattcttgatgct
atttgttatgtaccatatctaattgatttcattttagaatatagagaacctttagttaat
agagaaagaaaagtaaaagaattattcaaaaactttgatgatgatacagaagaggaagag
gatgattttgatagtgaagatttagaggaagaagattctgaagaagaaagtttcgaagat
gatgaagaaaaagtttctggtaaaaaacaaaaaaaactagataaaagagctcaaacaatc
atcgaagcatttaaaaatcttgaaaaagcaaaaaaagagtggttgaaatttcaagcaaaa
gagacttcaaaatctgatgaagaatctgatttaatgacttttaatcttgcaactgctttc
aaaaaaagacttttaaaagaagctttacttgatttaggtccaacatctaaacttattaca
gaaattgtaaaagctatggaaacagcgcttaaatcagatactggttttgatagtgaatta
aaaagattagagtataaattaccactatttaatgaaactttacaaaaaaaccaccaaaag
attttagataatattgtaaatttatctaaagcacaaataactgcaatggttcctgaagca
actatggtttctacatatatggaaataaaaaaattatttcaaacagcagaagcttctaaa
gatggttttgatttaactcctgaagagttaaaagcagttcttgaacaaataaaaagaggt
aaacaaattacggatacttcaaaaacaagaatggcaaaatcaaatttaagacttgttgtt
tctattgcaaaaagatatacaaatagaggtttaccattccttgacttgattcaagaaggt
aatattggactaatgaaagctgttgataagtttgaatataaaaaaggttataaattctca
acttatgcaacttggtggattagacaagctataagtagagcaattgcagatcaagcaaga
actattagaattccaattcacatgattgaaactattaatagaattaataaaatcatcaga
aaaggtgttcaagaaaatggtaaagagcctgatattgaagaaattgcaaaagaagttgga
ttaccagttgataaagtaaaacaagttattaaaatcacaaaagaacctgtatctttagaa
gctcctattggaagtgatgaagatggtaaattcggagattttgttcctgatgaaaaagct
ccaacaccaattgataatatcatgaaagaagatttacaagggcaaattgaccaaatttta
agtcaattaaatgaaagagaacaagcagttattagaatgagatttggtcttatggaagat
gcaagtgatagaacattagaagaaattggtaaagaactaaacgtaacaagagaaagagtt
agacaaatcgaatctagtgctataaaaaaactaaaacatccaaaagttggtaaaaatctt
aaaaattacgtagaaagttaa
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