Aliarcobacter butzleri ED-1: ABED_1061
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Entry
ABED_1061 CDS
T01823
Name
(GenBank) putative ATP-dependent RNA helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
abt
Aliarcobacter butzleri ED-1
Pathway
abt03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
abt00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
ABED_1061
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
abt03019
]
ABED_1061
Enzymes [BR:
abt01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
ABED_1061
Messenger RNA biogenesis [BR:
abt03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
ABED_1061
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Helicase_C
DEAD
HI1480
Cas3-like_C_2
Phage_integrase
Motif
Other DBs
NCBI-ProteinID:
BAK70778
LinkDB
All DBs
Position
complement(1080927..1081811)
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AA seq
294 aa
AA seq
DB search
MLEHIKNKNVNLSSVTTVVIDEVDTMLDMGFLEDLEKILPNIGQNRQIMMFSATLNQNVK
KLAKEFLSDPVVIEVAKQRSSVKIIDQQIVLVDEDKKAELLSYLIGSRNYSQVLVFVNMK
KEADDLVAHLNLDGLPAECIHGDVRQTARAKALRKFKSGDIRVLVATDIAARGIDIELLP
VVVNFALPETITDYTHRIGRTGRAGNAGTAITLLSVKDYKFMIEIEKELIINIPRIEVEG
FEATEKKPRLFKARPKPLSQRKAESKAKEQNKTAKTSTKKRKITKRDSNKNFRK
NT seq
885 nt
NT seq
+upstream
nt +downstream
nt
ttgttagaacatattaaaaataaaaatgttaatttatcgagcgtaacaacagttgtgatt
gatgaagttgatactatgcttgacatgggatttttagaagatctagagaaaattttgcca
aatatcgggcaaaatagacaaattatgatgtttagtgcaaccttgaatcaaaatgtaaaa
aaactagcaaaagagtttttatctgatcctgttgttatcgaagtagcaaaacaacgttca
agtgtaaaaatcattgaccaacaaatagtattagttgatgaagataaaaaagctgaacta
ttatcttatttaattggctcaagaaactattcacaagttttagtttttgttaatatgaaa
aaagaagctgatgatttagtagctcatctaaatcttgatggtcttcctgctgaatgtatt
catggagatgttagacaaacagcacgtgcaaaagctttaagaaaattcaaatcaggtgat
attagagttttagttgcaacagatatagctgcacgtggaattgatatagaacttttacca
gtagttgtaaattttgcattacctgaaacaataactgactatacgcatagaattggaaga
actggacgagctggaaatgctggaacagcaatcactcttttaagtgtaaaagattataaa
tttatgattgaaatagaaaaagagttaattataaatattccaagaattgaagttgaaggt
tttgaagcaacagaaaaaaaaccaagactttttaaagcaagaccaaaaccattaagtcaa
agaaaagcagaatctaaagcaaaagaacaaaataaaacagctaaaacatcaacaaaaaaa
agaaaaataacaaaaagagattctaataaaaattttaggaaataa
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