Aliarcobacter butzleri ED-1: ABED_1112
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Entry
ABED_1112 CDS
T01823
Name
(GenBank) polynucleotide phosphorylase/polyadenylase
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
abt
Aliarcobacter butzleri ED-1
Pathway
abt03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
abt00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
ABED_1112
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
abt03019
]
ABED_1112
03016 Transfer RNA biogenesis [BR:
abt03016
]
ABED_1112
Enzymes [BR:
abt01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
ABED_1112
Messenger RNA biogenesis [BR:
abt03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
ABED_1112
Transfer RNA biogenesis [BR:
abt03016
]
Prokaryotic type
tRNA degradation factors
ABED_1112
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
S1
KH_1
PNPase
KH_2
MIC19_MIC25
Motif
Other DBs
NCBI-ProteinID:
BAK70829
LinkDB
All DBs
Position
1138042..1140219
Genome browser
AA seq
725 aa
AA seq
DB search
MSKVCEFELNGKQEIFEFEKVAKQSNGAVLAKIGNAVVLATVVSEFDNPVSEDFTPLTVQ
YIEKTYAAAKLPGGFIKREGKPSDFETLTSRVIDRSLRPLFPKGYVYPTTITVMVLSADK
NVDLQTLSLNAANAALYTSNLPIKKSVCGVRVGKIENTLVINPTNEQLENSTLDLYVAGS
KDELLMIEMKTISSSELVEIDIEAFTKIHNTNEMDEDALVEAIAFAQNALKEANLTYEKA
FEEVSKEKVEVELVKFTIEESVINYVRDNFSNDIKEAIKKLAKSERATQLKDVAKMISKN
EYCSSNEIEFNTIYEAVSVVKREIVRAMIVNERVRADGRGLKDVRPISIETNILPSTHSS
CLFTRGETQALVIGTIAGPKDGQMYEVLTDKSTSMENFMVHYNFPGFSVGEAKPMFGVGR
RELGHGNLAKKALEATIDKDYNETVRLVSEILESNGSSSMATVCGGSLALKAAGIPISDL
VAGVAMGMVVENDKYAILTDIMGLEDHDGDMDFKVAGTSKGITALQMDIKLGGIELSVLK
EALLQAKEGRTHILSLMKDAEKDIVPSNALPLIEQFAIDPSKIMVVIGKAGATIKEIIEK
FTVSIDLDKENGTVKVSGGNKQNILDACEHIKTISNNASSKKDASKNIDFEKLYSEDEVV
IGKVERLADFGAFILLPKGGEGLLHISKISKDRVKNVADVLSIGQELEVKVLKVKKDRIE
LSSAN
NT seq
2178 nt
NT seq
+upstream
nt +downstream
nt
atgtcaaaagtttgtgaatttgaattaaatggaaaacaagagatttttgaatttgaaaaa
gtagctaaacaatcaaatggtgctgttctagcaaaaatagggaatgctgttgttttagca
actgttgtaagcgagtttgataatcctgttagtgaagatttcactcctttaacagttcaa
tatattgaaaaaacttatgctgcagcaaaattgccaggaggatttataaaaagagaagga
aaacctagtgattttgaaacattaacatcaagagtaattgatagaagtttaagaccactt
ttccctaaaggttatgtttatcctacaacaattacagttatggttttaagtgctgataaa
aatgttgatttacaaactttatctttaaatgcagcaaatgcagctttatatacttcaaat
ttaccaattaaaaaatcagtttgtggagttagagttgggaaaatcgaaaatactcttgta
attaatccaacaaatgaacaattagaaaattcaactttagatttatatgtagctggttct
aaagatgaattattgatgattgagatgaaaactatctcttcaagtgagcttgtagagatt
gatattgaagcatttactaagattcataatacaaatgagatggatgaagatgctttagtt
gaagcaattgcatttgcacaaaatgctttaaaagaggctaatttaacttatgaaaaagct
tttgaagaagtttcaaaagaaaaagttgaagtagaattagttaaatttactattgaagaa
tctgtaataaattatgtaagagacaatttttctaacgatattaaagaagctatcaaaaaa
ttagcaaaaagtgaaagagcgactcaattaaaagatgttgcaaaaatgatttcaaaaaat
gagtattgtagctcaaatgaaatagaatttaacactatttatgaagctgttagtgttgta
aaaagagaaattgtaagagctatgattgtaaatgaaagagtaagagcagatggaagaggt
ttaaaagatgtaagaccaatttcaatagaaacaaatattttaccttctacacattcttct
tgtctttttacaagaggtgagacacaagcacttgttattggaacaattgctggacctaaa
gatggacaaatgtacgaagttttaacagacaaatcaacttcaatggaaaactttatggtt
cattataattttccaggatttagtgttggtgaagcaaaacctatgtttggagtaggaaga
agagaattaggacatgggaatttagctaaaaaagctttagaagcaactattgataaagat
tataatgaaactgtaagattagtttctgaaatacttgaatcaaatggttcttcatctatg
gcaacagtttgtggtggttctttagcattaaaagcagctggaattccaatttctgattta
gttgctggtgttgcaatgggaatggttgttgaaaatgacaaatatgctattttaactgac
attatgggattagaagatcatgatggtgatatggattttaaagtagcaggaacatctaaa
ggaattacagctttacaaatggatataaaattaggtggaattgaattatctgttttaaaa
gaagctttacttcaagcaaaagaaggacgaactcatattttatctttaatgaaagatgct
gaaaaagatattgttccaagtaatgctttgcctttaattgaacaattcgctattgatcca
agtaaaataatggtagttataggaaaagcaggagctacaataaaagagattatagaaaaa
tttacagtatctattgatttagataaagaaaatggtacagtaaaagtaagtggaggaaat
aaacaaaatattcttgatgcttgtgagcatattaaaactatttcaaataatgcttcttca
aaaaaagatgcttcaaaaaatatagattttgagaaactttattcagaagatgaagttgta
attggtaaagtagaaagattagcagattttggagcgtttattcttttaccaaaaggtggt
gaagggcttttacatatttcaaaaatatcaaaagatagagtaaaaaatgttgccgatgtt
ttaagtatcgggcaagaattagaagtaaaagtactaaaagtaaaaaaagatagaatagaa
ttatcttcagcaaattaa
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