Aliarcobacter butzleri ED-1: ABED_1380
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Entry
ABED_1380 CDS
T01823
Name
(GenBank) ATP-dependent RNA helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
abt
Aliarcobacter butzleri ED-1
Pathway
abt03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
abt00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
ABED_1380
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
abt03019
]
ABED_1380
Enzymes [BR:
abt01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
ABED_1380
Messenger RNA biogenesis [BR:
abt03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
ABED_1380
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_22
AAA_19
P-loop_SecA
UTP25_NTPase-like
Motif
Other DBs
NCBI-ProteinID:
BAK71097
LinkDB
All DBs
Position
complement(1416982..1418289)
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AA seq
435 aa
AA seq
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MSFSNLGLCKEILRAIKEEGYTTPTPIQSKSIPVILSKKDVLAAAQTGTGKTAGFTLPLL
QRLKDSNLKDKKTQVRALILTPTRELAAQVAQSVETYGKYLPFKSAVIFGGVGINPQKAL
LKKGVDIIIATPGRLLDLISQDSLDLSKIEFLVLDEADRMLDMGFINDIKKILAILPKQR
QNLLFSATFSNEIKKLADGLLKSPVLVEVSKANSASFKVEQVVHHVDKDRKKELLLHLVN
KNSWQQVLVFTRTKHGANKLSEALVKDKITSAAIHGNKSQGARTKALDDFKNGKVRVLVA
TDIAARGIDIEQLPHVVNFELPNVAEDYVHRIGRTGRARNNGIAISLVCVDEHEYLFGIE
KLIKQKIKKVEINGFKVNPNIKAEPIGNRNNRGNKANNSNQNRKVKPKDENSSSNTKPRR
FTSKNRRTNTSSKNI
NT seq
1308 nt
NT seq
+upstream
nt +downstream
nt
atgtcattttcaaacttaggtttatgtaaagaaattcttcgtgcaattaaagaagaaggt
tatacaacaccaactccaatccaatcaaaatcaattccagtaattttatcaaaaaaagat
gttttagcagctgctcaaacaggaactggaaaaacagctggatttacacttccactttta
caaagattaaaagatagtaatttaaaagataaaaaaactcaagttagagctttgattctt
actccaacaagagaacttgcagctcaagttgcacaaagtgttgaaacttatggaaaatat
cttccttttaaatcagcagttatttttggaggagttggaataaatccacaaaaagctctt
ttaaaaaaaggtgttgatattatcattgcaactcctggaagattgcttgatttaatctct
caagatagtcttgatttatcaaaaatagagtttttagtattagatgaagcagatagaatg
cttgatatgggatttataaatgatattaaaaagattttagcaattttgccaaaacaaaga
caaaatctacttttttcagcaactttttcaaatgagataaaaaaattggctgatggctta
ctaaaatcgcctgttttagtagaagtttcaaaagcaaatagtgcttctttcaaagttgaa
caggttgttcatcatgttgataaagatagaaagaaagagcttttattgcatttagtaaat
aaaaacagttggcaacaagttttggttttcacaagaacaaaacatggagcaaataaacta
agcgaagcacttgtaaaagataaaatcacatcagcagcaattcatggaaataaatcgcaa
ggtgcaagaacaaaagcattagatgattttaaaaatggaaaagtaagagttttagttgca
actgatattgcagcgcgtggaattgatattgaacaacttcctcatgttgtaaattttgaa
ttaccaaatgttgcagaagattatgttcatagaataggaagaactggacgagcaagaaat
aatggtattgctatatctttagtttgtgtagatgaacatgagtatttatttggaattgaa
aagttaattaaacaaaaaatcaaaaaagtagagataaatggatttaaagtaaatccaaat
atcaaggcagaacctattggaaatagaaataacagaggaaataaagctaataattcaaat
caaaatagaaaagtaaaaccaaaagatgaaaattcatcttcaaacacgaaaccaagaagg
tttacttcaaaaaatagaagaacaaatacaagttctaaaaatatttaa
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