Aliarcobacter butzleri ED-1: ABED_2068
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Entry
ABED_2068 CDS
T01823
Name
(GenBank) single-stranded DNA-specific exonuclease
KO
K07462
single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
abt
Aliarcobacter butzleri ED-1
Pathway
abt03410
Base excision repair
abt03430
Mismatch repair
abt03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
abt00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
ABED_2068
03430 Mismatch repair
ABED_2068
03440 Homologous recombination
ABED_2068
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
abt03400
]
ABED_2068
DNA repair and recombination proteins [BR:
abt03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
RecJ
ABED_2068
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
ABED_2068
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
ABED_2068
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DHH
RecJ_OB
DHHA1
Motif
Other DBs
NCBI-ProteinID:
BAK71785
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Position
2155413..2156981
Genome browser
AA seq
522 aa
AA seq
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MSKITKDRLFELLSARHVNNPYSKLADIPPPTSFKDIDIATKRIKKAILENETITIVGDY
DVDGIVSTTIMLDFFKQINIKVNHIIPNRFEHGYGLSTKIVDLIEKGLVITVDNGISAYE
ASLELKEKNIDLIITDHHTVGEKIPQALAIINPKQKDCTFPFKDICGAQVAWYLCAAIKK
EMNLNVNMSDYLDLLCIAIIADIMPMTALNYTITKQGLKKLKSSSREAFKLLNSILSKES
LISDDIGFFIAPKLNSAGRMDDATIALDFLLSEDSFSANESLSLLDELNNYRKTLQEDIS
NKANLKIDKNKNAIIVWDENWHEGVIGIVASKLSNLYKKPAFIFTVQENDIAKGSVRANS
NINLYELISKASHLLIGFGGHKNAAGLSLKLENIEEFEKIINEELENFKDDLHIEIDTLG
ELDVSSVDLEFLSIIEGFEPYGLENHRPIFKISNVNLVKYDLIGRDKNHLKLTLDSNGVI
FEAIKFNDSNKNIPNILNLIVSVAKNEFKGVITPQFLIQEIL
NT seq
1569 nt
NT seq
+upstream
nt +downstream
nt
atgtctaaaataactaaagatagactttttgaactattatctgcaaggcatgtaaataat
ccttattcaaaacttgcagatattccccctccaacttcatttaaagatatagatattgct
acaaaaagaattaaaaaagcaattttagaaaatgaaactattactatagttggtgattat
gatgtagatggtattgtttctacaactattatgcttgatttttttaaacaaataaacata
aaagtaaatcacataatcccaaatagatttgaacatggttatggattatctactaaaatt
gttgatttaatagaaaaaggtttagtaattacagtagataatggaatatctgcttatgaa
gcaagtttagaattaaaagaaaaaaatattgatttaattataacagatcatcatacagtt
ggtgagaaaataccacaagctcttgcaataataaacccaaaacaaaaagattgtactttt
ccatttaaagatatttgtggagctcaagttgcttggtatttatgtgcagcaataaaaaaa
gagatgaatttaaatgtaaatatgtcagactatcttgacttattatgtattgcgataatt
gcagatattatgcctatgactgcactaaattatacgattacaaaacaaggattaaaaaaa
ctaaaatcatcttcaagagaagcttttaaacttttaaatagcattttatcaaaagagtct
ttgataagtgatgatattggtttttttattgctccaaagctaaatagtgcaggaagaatg
gatgatgcaactattgctttagattttttattatctgaagactcttttagtgcaaatgaa
tctttaagtttattagatgaactaaacaattatagaaaaactttgcaagaagatatttca
aataaagcaaacttaaaaattgacaaaaataaaaatgccattattgtttgggatgaaaac
tggcatgaaggagttattggaatagttgcttcaaaattatctaatttatataaaaaacct
gcctttatttttacagttcaagaaaatgatattgcaaaaggaagtgtaagagcaaattca
aatataaatttatatgaacttatctcaaaagcttctcatttacttataggtttcggtggg
cataaaaatgctgcaggattatctttaaaattagaaaatatagaagaatttgaaaaaata
ataaatgaagaactagaaaattttaaagatgatttacatattgaaattgatacacttgga
gaattagatgtttctagtgttgatttagagtttttatctattattgaaggatttgaacct
tacggcttagaaaatcatcgtccaattttcaaaatctcaaatgtaaatttagtaaaatat
gatttaattggtcgtgataaaaatcatctaaaacttactttagatagtaatggagtaatc
tttgaggctataaaatttaatgattcaaataaaaatattccaaatattctaaacttaatt
gtatcagttgcaaaaaatgaatttaaaggagttataactcctcaattcttaattcaagag
attttataa
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