Aliarcobacter butzleri RM4018: Abu_0042
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Entry
Abu_0042 CDS
T00600
Name
(GenBank) ATP-dependent RNA helicase, DEAD box family
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
abu
Aliarcobacter butzleri RM4018
Pathway
abu03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
abu00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Abu_0042
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
abu03019
]
Abu_0042
03009 Ribosome biogenesis [BR:
abu03009
]
Abu_0042
Enzymes [BR:
abu01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
Abu_0042
Messenger RNA biogenesis [BR:
abu03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
Abu_0042
Ribosome biogenesis [BR:
abu03009
]
Prokaryotic type
rRNA helicases
Abu_0042
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_30
Cas3-like_C_2
Ribosomal_L12_N
SecA_DEAD
Helicase_RecD
Motif
Other DBs
NCBI-ProteinID:
ABV66327
UniProt:
A8EQV3
LinkDB
All DBs
Position
51167..52717
Genome browser
AA seq
516 aa
AA seq
DB search
MTFNDFNFKELLQKAIDEAGFKEPSPIQEQAIPYILDGRDIVGQAHTGTGKTAAFGLPIL
NKIKAKSGVEAVVIVPTRELAMQVSDELYRFGKFLGINTATVYGGQAYARQIKLIENSSV
IVATPGRFLDLLRGDKISIKPKFVILDEADEMLDMGFLDDIKEIFTFLPENRQTLLFSAT
MPTAIKNLAKTILKEPEFVTLTKSDVTNSKITQTFYVVDEKERDDALIRLFDFKNPKKSI
IFCRTKKDVDRLSTFLVSQGFMAKALHGDMEQKQREEAIRAFKSSKLEILIATDVAARGL
DVNDVTHVFNYHLPFDSESYVHRIGRTGRAGKEGMAISIVTPHEFRMLQKIEKSIGTKLE
SKVVPNIGLVKKKKFAELKQQVLEQEIKDYALELVEELKEEFDVSTIAFKLASILSSSTY
VQGNNHIGKSESDIEKLIEYASKGSDRDGGDRRRNNSRGRSRNGGGNSRFRDGDRNRENR
DRNRSDRGDRSGDRRRTSSSSKPRSENSSNRARKKD
NT seq
1551 nt
NT seq
+upstream
nt +downstream
nt
atgacttttaacgattttaattttaaagaattattgcaaaaagcaatagatgaagcggga
tttaaagaaccaagtcctattcaagaacaagctattccatatattttagatggaagagat
attgttggacaagcgcatacaggtacaggaaaaacagcagcttttggacttccgatttta
aataaaataaaagcaaaaagtggtgtagaagcagttgttattgttcctacaagagaatta
gctatgcaagtttcagatgaactttatagatttggtaagtttctaggtataaacacagct
actgtttacggtggacaagcttatgctagacaaataaaactaattgaaaattcaagtgtt
attgtggcaactccaggaagatttcttgatttattaagaggtgacaaaatctctataaaa
ccaaaatttgttattcttgatgaagcagatgaaatgcttgatatgggatttttagatgat
ataaaagagatttttactttcttaccagaaaatagacaaactttattattctctgcaaca
atgccaactgctattaaaaacttagcaaaaacaattctaaaagagccagaatttgttact
ttaacaaaatctgatgtaactaactcaaaaatcactcaaactttttatgttgttgatgaa
aaagagagagatgatgctttaattagattatttgattttaaaaacccaaaaaaatcaata
atcttttgtagaacaaaaaaagatgttgatagattatcaacttttttagtttctcaaggt
tttatggcaaaagcacttcatggtgatatggaacaaaaacaaagagaagaagcaataaga
gcttttaaatcttcaaaattagagattttaatagcaacagatgttgctgctcgtggtctt
gatgtaaatgatgtaacgcatgtatttaactaccatttaccatttgattctgagtcatat
gttcatagaattggaagaactggaagagcaggaaaagaaggtatggcaatttctattgta
acacctcatgaatttagaatgttacaaaaaatagaaaaatcaataggaacaaaactagaa
tctaaagttgtaccaaatattggtttagttaaaaagaaaaagtttgcagagttaaaacaa
caggttttagagcaagaaataaaagattatgcactagaattagttgaagagttaaaagaa
gagtttgatgtttcaactattgcatttaaacttgcttctattctttcttcaagcacttat
gttcagggaaataaccacattggtaaatctgaatctgatatagaaaaacttattgaatat
gcttctaaaggaagtgatagagatggtggagatagaagaagaaataattctagaggaaga
agccgaaatggtggtggtaattctagatttagagatggtgatagaaatagagaaaataga
gatagaaatagaagtgatagaggagatagaagtggcgatagaagaagaacttcttcttca
tctaaaccaagaagtgaaaattcaagcaatagagcaagaaaaaaagattaa
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