Aliarcobacter butzleri RM4018: Abu_0410
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Entry
Abu_0410 CDS
T00600
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
abu
Aliarcobacter butzleri RM4018
Pathway
abu03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
abu00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
Abu_0410 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
abu03400
]
Abu_0410 (mfd)
Enzymes [BR:
abu01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
Abu_0410 (mfd)
DNA repair and recombination proteins [BR:
abu03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
Abu_0410 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
TRCF
UvrB_inter
CarD_TRCF_RID
ResIII
SNF2-rel_dom
Cas3-like_C_2
AAA_30
GpA_ATPase
Motif
Other DBs
NCBI-ProteinID:
ABV66685
UniProt:
A8ERW1
LinkDB
All DBs
Position
410094..413081
Genome browser
AA seq
995 aa
AA seq
DB search
MKNIYEFLKNLKDEKRLKECQLLIVNDDRQAQIASDIVSYLGFKPFLLADFRANFGDDLL
SFSEELHEITKTLGDFYSYKKQDKILISPIRTISYPLPKEKCFESFTINFADRLNLEELK
SKLYNWGYYFVDIVTSEGEVSLRGDILDICPLGSDFGYRVSLFDDEVESIRKFDIEDQKS
SKEEIESFSINPAFLALDEATFEEINEQIQTISSDAFIKDIHSLGFWYLGELGEYLPQKM
SSFITQDALDELEEVYVFEEKRVNKDKFLLTPQIYNSKNYQEINPANVKEFISFHNDKKI
TIISGSEAKVKGYDLDLSDKNINYVFENYILNLVSDDEVIISLNKEVKKRRKKKVKLVLD
ELQYNDFVVHEKYGIGQYKGIEPVTVMGAKRDFVIIQYQGEDKLLVPVENLDLIDRYVAD
GNSYAVVDKLGKGSFAKLKEKVKDKLFAIANDIIKLAAARELVNGIKINTDKKVLEDFQK
SAGFEYTKDQKRSIKEILDDLSSGRVMDRLLSGDVGFGKTEVAMNALLAVILDGYQTIFV
CPTTLLATQHYHSIQKRLESFGIRVAKLDGKTTAKEKTSIKKGLENADIKLVIGTHSLLD
IKTSNLALVIIDEEHKFGVKQKEKLKQLREDVHIFSMSATPIPRTLNLALSKLKGMSSLL
TPPSERLGVRTYVKEYSEKLIKEIILREKRRGGQLFYVHNNIASIEAKKKDIEAIVPNIK
IDIIHSQIKPEQAEKIIEAFENKEFDILLATSIVESGIHLPNANSIIIDGADRFGIADLH
QLRGRVGRSNKEGYCYYVVEDKKSITDDAVKRLVALESNSYLGSGTALAHQDLEIRGGGN
IIGEAQSGHIKQIGYGLYLKMLEDTLATLSGDEKNEKKTVDIKLAISAYISDEYISEDRV
RLELYRRLSKASDIQEVYSIEEEMEDRFGKPDIVTKQFIELIIIKILALKLGIQTISSYE
MNITFTKADDTKESIKSPSKDDDDIINTTLRYLRK
NT seq
2988 nt
NT seq
+upstream
nt +downstream
nt
gtgaaaaatatttatgaatttttaaaaaatttaaaagatgaaaaaagattaaaagagtgt
caacttttaatcgtaaatgatgacagacaagctcaaatagcttctgatatagtctcttac
ttaggatttaaaccttttttattagctgattttagagcaaattttggagatgacttactt
tcctttagtgaagaactacatgaaataactaaaactttaggtgatttttattcatacaaa
aaacaagataaaatcctaatctctccaataagaacaatctcttatcctcttccaaaagaa
aaatgttttgaaagttttactataaattttgcagatagattaaatcttgaagagttaaaa
agtaaattatacaattggggatactattttgtagatattgttacaagtgaaggtgaagtt
tcacttcgtggtgatattttagatatttgtcctttaggaagtgattttggatatagagta
agtttgtttgatgatgaggttgaaagtatcagaaagtttgatattgaagaccaaaaatct
tcaaaagaagagatagaaagcttttcgattaatccagcttttcttgctcttgatgaagca
acttttgaagaaataaatgaacaaatccaaactatttcaagtgatgcctttatcaaagat
attcactctttaggattttggtatttaggagaacttggagagtatttacctcaaaaaatg
agttcatttatcactcaagatgctttagatgaactagaagaagtttatgtttttgaagaa
aaaagagtaaacaaagataagtttttacttactcctcaaatttacaatagcaaaaattat
caagagataaatccagcaaatgtaaaagagtttatctcttttcataatgataaaaaaatc
acaataataagtggaagtgaagcaaaagtaaaaggttatgatttagatttaagtgacaaa
aatattaattatgtttttgaaaactatattttaaatttagtttcagatgacgaagtaata
atctctttaaataaagaggtaaaaaaacgaagaaagaaaaaagtaaaacttgttcttgat
gagttacaatataatgattttgtggtacatgaaaaatatggaattggtcaatataaaggg
attgaaccagttactgtgatgggtgcaaaaagagattttgtaattatccaatatcaagga
gaagataaacttttagttcctgttgaaaatcttgatttaatagatagatatgttgctgat
ggaaactcttatgctgttgttgataagcttggaaaaggaagttttgcaaaactaaaagag
aaagtaaaagataaactttttgctattgcaaatgatattatcaaactagcagctgcaagg
gaacttgtaaatggtattaaaatcaatacagataaaaaagttcttgaagatttccaaaaa
agtgcaggttttgaatatacaaaagaccaaaaaagaagtatcaaagagattttggatgat
ttaagtagcggtcgagttatggatagacttctttcaggtgatgttggttttggaaaaaca
gaagttgctatgaatgccttattggcagttattttagacggttatcaaactatatttgta
tgtccaacaacacttttggcaactcaacactatcatagtattcaaaaaagacttgaaagt
tttgggataagagttgctaaacttgatggaaaaacaacagcaaaagagaaaacaagtatc
aaaaaaggtttagaaaacgcagatataaaacttgttattggaacacactctttacttgat
ataaaaacttctaatttagctttagttatcatcgatgaagagcataaattcggtgtaaaa
caaaaagagaaattaaaacaattaagagaagatgtacatattttttctatgagtgcaact
ccaattccaagaactttaaacttagccttatcaaaactaaaaggtatgagttcacttctt
acacctccaagtgaaagattgggagtgcgaacttatgtaaaagagtacagcgaaaaacta
atcaaagagataattttaagagaaaaaagaagaggtggacaactattttatgttcacaat
aacatagcatcaatcgaagcaaagaaaaaagatatagaagcaatagttccaaatatcaaa
atagatattattcattctcaaataaaaccagaacaggctgaaaagatcatagaagccttt
gaaaacaaagagtttgatattcttcttgcaacttctattgttgaatcaggaattcacttg
ccaaatgcaaactctattataattgatggtgcagatagatttggaattgctgatttacat
caacttcgaggacgagttggacgaagtaataaagagggatattgttattatgtagttgaa
gataaaaaatcaataactgatgatgcagtaaaaagacttgtagctttagagtcaaactca
tatttaggaagtggaactgctttagctcatcaagatttggaaatcagaggtggtggaaat
atcataggtgaagcacaaagtggacatatcaaacaaataggatatggtttatatcttaaa
atgttagaagatactcttgcaactttaagtggtgatgaaaaaaatgagaaaaaaacagtt
gatataaaactagctatttcagcatatattagtgatgaatacattagtgaagatagagtt
agacttgaactttatagaaggttaagtaaggctagtgatattcaagaagtttattctatt
gaagaagagatggaagatagatttggaaaacctgatattgttacaaaacagtttattgag
ttgattatcataaaaattttagctttaaaactaggtattcaaactattagttcttatgag
atgaatattacatttacaaaagctgatgatacaaaagagagtataaaatcaccatcaaaa
gatgatgatgacataataaatacaactttaagatatttaagaaaataa
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