Aliarcobacter butzleri RM4018: Abu_1116
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Entry
Abu_1116 CDS
T00600
Name
(GenBank) putative ATP-dependent RNA helicase RhlE
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
abu
Aliarcobacter butzleri RM4018
Pathway
abu03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
abu00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Abu_1116
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
abu03019
]
Abu_1116
Enzymes [BR:
abu01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
Abu_1116
Messenger RNA biogenesis [BR:
abu03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
Abu_1116
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Helicase_C
DEAD
Cas3-like_C_2
HI1480
Phage_integrase
AAA_22
RNase_J_C
Motif
Other DBs
NCBI-ProteinID:
ABV67376
UniProt:
A8ETV2
LinkDB
All DBs
Position
complement(1114230..1115285)
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AA seq
351 aa
AA seq
DB search
MILVPTRELATQIGKVIDDYAKYLDIKRLAIFGGVSSKEQEKKLSNGIDILVSTSGRLLE
HIKNKNVNLSSVTTVVIDEVDTMLDMGFLEDLEKILPNIGQNRQIMMFSATLNQNVKKLA
KEFLSDPVVIEVAKQRSSVKIIDQQIVLVDEDKKAELLSYLIGSRNYSQVLVFVNMKKEA
DDLVAHLNLDGLPAECIHGDIRQTARAKALRKFKSGDIRVLVATDIAARGIDIELLPVVV
NFALPETITDYTHRIGRTGRAGNAGTAITLLSVKDYKFMIEIEKELIINIPRIEVEGFEA
TEKKPRLFKARPKPLSQRKAESKAKEQNKTAKTSTKKRKITKRDSNKNFRK
NT seq
1056 nt
NT seq
+upstream
nt +downstream
nt
ttgatattagttcctacaagagagttagcaactcaaataggaaaagttattgatgattat
gcaaaatatttagatattaaaagactagctatttttggtggtgtttcatcgaaagaacaa
gaaaaaaagttatcaaatggaattgatattttagtttcaacttcaggaagattgttagaa
catattaaaaataaaaatgttaatttatcaagtgtaacgacagttgtgattgatgaagtt
gatactatgcttgatatgggatttttagaagatttagagaaaattttaccaaatatcgga
caaaatagacaaattatgatgtttagtgcaaccttaaatcaaaatgtaaaaaaacttgca
aaagagtttttatctgatcctgtagttatcgaagtagcaaaacaacgttcaagtgtaaaa
atcattgaccaacaaatagtattagttgatgaagataaaaaggctgaactattatcttat
ttgattggttcaagaaactattcacaagttttagtttttgttaatatgaaaaaagaagct
gatgatttagtagctcatctaaatcttgatggtcttcctgctgaatgtattcatggagat
attagacaaacagcacgtgcaaaagctttaagaaaattcaaatcaggtgatattagagtt
ttagttgcaacagatatagccgcacgtggaattgatatagaacttttaccagtagttgta
aattttgctttacctgaaacaataactgactatactcatagaattggaagaactggacga
gctggaaatgctggaacagcaatcacacttttaagtgtaaaagattataaatttatgatt
gaaatagaaaaagagttgattataaatattccaagaattgaagttgaaggttttgaagca
acagaaaaaaaaccaagactttttaaagcaagaccaaaaccattgagtcaaagaaaagca
gaatctaaagcaaaagaacaaaataaaacagctaaaacatcaacaaaaaaaagaaaaata
acaaaaagagattctaataaaaattttaggaaataa
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