Aliarcobacter butzleri RM4018: Abu_2258
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Entry
Abu_2258 CDS
T00600
Symbol
recJ
Name
(GenBank) single-stranded DNA-specific exonuclease
KO
K07462
single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
abu
Aliarcobacter butzleri RM4018
Pathway
abu03410
Base excision repair
abu03430
Mismatch repair
abu03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
abu00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
Abu_2258 (recJ)
03430 Mismatch repair
Abu_2258 (recJ)
03440 Homologous recombination
Abu_2258 (recJ)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
abu03400
]
Abu_2258 (recJ)
DNA repair and recombination proteins [BR:
abu03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
RecJ
Abu_2258 (recJ)
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
Abu_2258 (recJ)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
Abu_2258 (recJ)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DHH
RecJ_OB
DHHA1
Motif
Other DBs
NCBI-ProteinID:
ABV68471
UniProt:
A8EWZ8
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All DBs
Position
2261210..2262778
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AA seq
522 aa
AA seq
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MSKITKDRLFELLSARHVNNPYSKLADIPPPTSFKDIDIATKRIKKAILENETITIVGDY
DVDGIVSTTIMLDFFKQINIKVNHIIPNRFEHGYGLSTKIVDLIEKGLVITVDNGISAYE
ASLKLKEKNIDLIITDHHTVGEKIPEALAIINPKQKDCTFPFKDICGAQVAWYLCAAIKK
EMNLNVNMSDYLDLLCIAIIADIMPMTALNYTITKQGLKKLKSSSREAFKLLNSILSKES
LISDDIGFFIAPKLNSAGRMDDATIALDFLLSEDSFSANESLSLLDELNNYRKTLQEDIS
NKANLKIDKNKNAIIVWDENWHEGVIGIVASKLSNLYKKPAFIFTVQENDIAKGSVRANS
NINLYELISKASHLLIGFGGHKNAAGLSLKLENIEEFEKIINEELENFKDDLHIEIDTLG
ELDVSSVDLEFLSIIEGFEPYGLENHRPIFKISNVNLVKYDLIGRDKNHLKLTLDSNGVI
FEAIKFNDSNKNIPNILNLIVSVAKNEFKGVITPQFLIQEIL
NT seq
1569 nt
NT seq
+upstream
nt +downstream
nt
atgtcaaaaataactaaagatagactttttgaactattatctgcaaggcatgtaaataat
ccttattcaaagcttgcagatattccccctccaacttcatttaaagatatagatattgct
acaaaaagaattaaaaaagcaattttggagaatgaaactattactatagttggtgattat
gatgtagatggtattgtttccacaaccattatgcttgatttttttaaacaaataaacata
aaagtaaatcacataattccaaatagatttgaacatggttatggattatctactaaaatt
gttgatttaatagaaaaaggattagtaattacagtagataatggaatatctgcttatgaa
gcaagtttaaaattaaaagaaaaaaatattgatttaattataacagatcatcatacagtt
ggtgaaaaaataccagaagctcttgcaataataaacccaaaacaaaaagattgtactttt
ccatttaaagatatttgtggagctcaagttgcttggtatttatgtgctgcaataaaaaaa
gagatgaatttaaatgtaaatatgtcagactatcttgatttattatgtattgctataatt
gcagatattatgcctatgactgcactaaattatactattacaaaacaaggattaaaaaaa
ctaaaatcatcttcaagagaagcttttaaacttttaaatagtattttgtcaaaagagtct
ttaataagtgatgatattggtttttttattgctccaaaactaaatagtgcaggaagaatg
gatgatgcaactattgctttagattttttattatctgaagactcttttagtgcaaatgaa
tctttaagtttattagatgaactaaacaattatagaaaaactttgcaagaagatatttca
aataaagcaaacttaaaaattgacaaaaataaaaatgccattattgtttgggatgaaaac
tggcatgaaggagttattggaatagttgcttcaaaattatctaatttatataaaaaacct
gcctttatttttacagttcaagaaaatgatattgcaaaaggaagtgtaagagcaaattca
aatataaatttatatgaacttatctcaaaagcttctcatttacttataggttttggtggg
cataaaaatgctgcaggattatctctaaaattggaaaatatagaagaatttgaaaaaata
ataaatgaagaattagaaaattttaaagatgatttacatattgaaattgatacacttgga
gaattagatgtttctagtgttgatttagagtttttatctattattgaaggatttgaacct
tacgggttagaaaatcatcgtccaattttcaaaatctcaaatgtaaatttagtaaaatat
gatttaattggtcgtgataaaaatcatctaaaacttactttagatagtaatggagtaatc
tttgaagctataaaatttaatgattcaaataaaaatattccaaatattctaaacttaatt
gtgtcagttgccaaaaatgaatttaaaggagttataactcctcaattcttaattcaagag
attttataa
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