Aminipila butyrica: Ami103574_12070
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Entry
Ami103574_12070 CDS
T06474
Symbol
rpoN
Name
(GenBank) RNA polymerase factor sigma-54
KO
K03092
RNA polymerase sigma-54 factor
Organism
abut
Aminipila butyrica
Pathway
abut02020
Two-component system
abut02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
abut00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
Ami103574_12070 (rpoN)
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
Ami103574_12070 (rpoN)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
abut03021
]
Ami103574_12070 (rpoN)
Transcription machinery [BR:
abut03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
Ami103574_12070 (rpoN)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma54_CBD
Sigma54_DBD
Sigma54_AID
HTH_23
Sigma70_r4
HTH_11
HTH_28
HTH_31
HTH_Crp_2
HTH_AsnC-type
HTH_3
Sigma70_r4_2
LacI
MarR_2
TetR_N
HTH_10
Sigma70_r3
HTH_IclR
HTH_24
HTH_Tnp_ISL3
HTH_5
HTH_AraC
Fe_dep_repress
HTH_21
Motif
Other DBs
NCBI-ProteinID:
QIB69988
UniProt:
A0A858BY09
LinkDB
All DBs
Position
complement(2515466..2516962)
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AA seq
498 aa
AA seq
DB search
MKLGYDLTIEQTQKLVMTPELIQAIQILQFNTQELDNYVQEQILVNPVLEQVSPADTGEA
SSSSRDRGEGLEIGGHAERPDSGQELRERTRELNSETLGSNELSSKEWAEHIKEREYDDI
SYRQGDYTKEDKDYSFEQFVTSDVTLSEHLMFQLQFAAIKPSYRNIGRYIIESLDDNGYM
TLTVEEIARALSVSREKVELVLQAIQGFEPVGVGARDLGECLLIQLESRGQLDQQVKRVI
DDYLEDLADNRLSAIARELGATVQEVQEICDLIRSLEPKPGRQFASQSTTRYIVPDIIVE
EVNGEYLVTVNESSTPRLMVSSYYEKVLQESNNDPNLTKFLSGRLNSAIWLIRSIEQRKQ
TIYNVVSAVVKYQQGFFDKGPKHLKTLTLKQIAEEVGIHESTVSRSINGKYMQSPRGVYE
IKYFFTSGVAGNQGEGISSQSIKSFIKEIVSGEDPKAPYSDQDMVQLLKGKGIEISRRTV
AKYRDELNILSSSKRKRY
NT seq
1497 nt
NT seq
+upstream
nt +downstream
nt
atgaaacttgggtatgatttaacaatagaacagacgcagaagctagtcatgactccagag
ctgattcaggctattcagattttacaattcaatactcaggaactggacaattacgtccag
gagcagatactggtcaatcccgtattggagcaggtgagccctgccgacacaggggaggct
tccagtagcagcagagacagaggagaaggcctggaaatcggtgggcacgctgaaaggccg
gattcaggacaagaacttcgggagcgtaccagagagttaaacagtgaaaccctgggcagt
aacgaactgagcagcaaggagtgggctgaacacatcaaggagcgggaatacgatgacatc
agctatcgtcagggagattacaccaaggaggataaggactattcttttgaacagttcgtc
acctcagatgtgaccttgtcggagcatctcatgtttcagcttcagtttgcggctattaag
cccagctatcgaaacatcggcagatacatcatcgagtcgctggacgataatggttatatg
acgttgaccgtggaggagattgccagagccttgagcgtgtctcgtgaaaaggtggaactg
gtgctccaggccatccaggggtttgaacctgtgggggttggtgccagagatttgggggaa
tgtctgttgatccagctggagagccgggggcagttggatcagcaagtcaagcgggttatc
gatgactatctggaggatttggccgataatagattatccgctattgcccgggagctaggt
gctacggttcaggaggttcaggaaatctgcgacttgattcgcagcctggagccaaagcct
ggacggcagtttgcctcacaatccaccacccggtacatcgtaccggacattattgtggag
gaggtcaatggagaatatctggttacggttaatgagagcagtacccctcggctgatggtc
agttcttattacgaaaaagttctacaggaatcgaacaacgatcccaacctgaccaagttt
ctgtcgggccggttaaattcagccatttggctgattcgcagcattgagcaacgcaagcag
accatttacaatgtggtcagcgctgtggtcaagtatcagcaaggcttttttgataagggc
ccaaaacatctgaagaccttgaccttaaagcagattgcagaagaggtggggattcacgaa
tccaccgtcagccgctctattaatgggaagtacatgcagagccctaggggagtctatgaa
ataaagtacttttttaccagtggggtggcaggcaaccagggagagggcatatcctctcag
agcattaaatcctttatcaaggaaatcgtctcaggagaagatcctaaagccccatacagt
gaccaggatatggtccagctgcttaaaggcaagggcattgagatttcccgcaggacggta
gccaagtatcgggatgaattgaatatcctatcttcctctaaaaggaaaagatattaa
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