Agaricus bisporus var. bisporus H97: AGABI2DRAFT118476
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Entry
AGABI2DRAFT118476 CDS
T03140
Symbol
AGABI2DRAFT_118476
Name
(RefSeq) hypothetical protein
KO
K15172
transcription elongation factor SPT5
Organism
abv
Agaricus bisporus var. bisporus H97
Pathway
abv03250
Viral life cycle - HIV-1
Brite
KEGG Orthology (KO) [BR:
abv00001
]
09120 Genetic Information Processing
09125 Information processing in viruses
03250 Viral life cycle - HIV-1
AGABI2DRAFT118476 (AGABI2DRAFT_118476)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
abv03021
]
AGABI2DRAFT118476 (AGABI2DRAFT_118476)
03019 Messenger RNA biogenesis [BR:
abv03019
]
AGABI2DRAFT118476 (AGABI2DRAFT_118476)
Transcription machinery [BR:
abv03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription elongation factors
AGABI2DRAFT118476 (AGABI2DRAFT_118476)
RNA polymerase I system
AGABI2DRAFT118476 (AGABI2DRAFT_118476)
Messenger RNA biogenesis [BR:
abv03019
]
Eukaryotic type
mRNA processing factors
3' end processing
DRB sensitivity inducing factor (DSIF) complex
AGABI2DRAFT118476 (AGABI2DRAFT_118476)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Spt5-NGN
KOW6_SPT5
DUF4649
Motif
Other DBs
NCBI-GeneID:
18077124
NCBI-ProteinID:
XP_006461604
JGI:
Agabi_varbisH97_2_118476
LinkDB
All DBs
Position
Unknown
AA seq
722 aa
AA seq
DB search
MSTTGTGTRHLHLPHGEVVNEDGSLKEAWEISWVDDPDDEDIGTAAIFSARHSGTPKATE
EGSSRNMKTKRPNKRTRKTPAPVGVFLDIEAAVSGSCDESEEVTEDEFINDIHDGNNDLG
MDMRLLTAAEVDSGFIENLRTKYAGRMSDRNDDSTPGTQEDSPQELGAVSPTWEVPVTMG
LEIDALFHIFRRSEEGLRGSYDAPRSSFFKPNMPGRIFIEVLSRASAIHICTGIPGVHTS
HTKRVGHASAVFYLESERVTDKIERGHWVRLTRSPYKHDLALVTSANPQQSTVDVLTIPR
VYYITKMGKRKRGTRAPQALFDPVKCGRPMSTVVTAGGYQFKDQIFDRAGYAILKDLPFG
RYRPVLHASRTEYILFSDCTALSSVELRSAMKLLANRTLKRFDKVRVLDRQFEGCVATVQ
DVEVYHLTIELPDVVYQGSVELPLLSVTRTYEVGDRVLVNSGKHNGLHGFVVSVDTASES
IILHSTTLQESDVVLCVDDVQRMPHDESYASGKIDEDLRLYEIENQTSYDLIATNILIPA
PKSIAPQPRSRTPNPDPMDVSNTTNTAWCPGEEAADRELIPDGVSPRISDRHWISVAERS
LTKIRKLSVKIAERTDDFNDPEVNGKMGVMHGVNGNKVRVYVRPLSSDQQGFFREIYYPF
LSYIPPTRKNQTVVVVEAGPDLGCVQNVITTPGDFTALGVVSGKYKFVKLKEIRTTGLAS
SL
NT seq
2169 nt
NT seq
+upstream
nt +downstream
nt
atgtcaacaacgggaactggtaccaggcatttgcatttacctcacggtgaagtggttaat
gaggatggcagtctcaaagaagcatgggaaataagttgggtagacgatcccgatgacgaa
gacattggtacggcggcgatcttcagtgctcgacattctggtacaccaaaggcaaccgaa
gaaggttcaagcaggaatatgaagaccaaacgaccaaataagagaacaaggaaaacacca
gcgcctgttggtgtatttttagatatcgaggctgctgttagtgggagctgtgatgagagt
gaggaggtcaccgaagacgaattcatcaatgacattcacgacggcaacaacgatttgggc
atggacatgagactcttaactgccgcggaagtcgatagtggtttcatcgagaacttgagg
acgaaatacgcgggcaggatgtctgataggaatgacgattcgacacccggaacgcaggag
gattcaccgcaagagttgggtgctgtatctccgacatgggaggtgcctgtaacgatgggt
cttgaaatagatgctttgtttcatatcttccggagaagtgaggaaggcttgcgcggcagc
tatgacgcacctcgatcttcgtttttcaagccaaatatgccaggccggattttcatagag
gttttaagtcgtgcgtccgccatacacatttgtacaggaattcctggtgtgcatactagc
cataccaagcgcgtaggccatgcgtctgccgttttttacctcgagagcgagcgagtcaca
gataaaatcgagagaggacattgggtccgcttgactcgatcaccatacaagcatgacctg
gcacttgttacgagcgcaaatcctcaacaaagtactgtggacgtcttaacaatacctcga
gtgtattatataacgaaaatggggaagcgcaaaaggggaacgcgagcgccccaggcttta
tttgatccagtaaagtgtggccgaccaatgtcaacagtcgttacagcaggcgggtatcag
ttcaaagaccaaatctttgatagagcaggctacgctattctcaaagacttgccctttgga
cggtacaggccggttttacatgcatcgaggacagaatacatcctcttctcggactgcacc
gctctgtcatctgttgaactgcgttcggcaatgaagcttcttgcaaataggacacttaaa
cggttcgacaaagttcgtgttcttgataggcagttcgaaggatgtgttgcgacagtgcag
gacgtcgaagtgtaccatcttaccattgaattaccggacgtcgtctatcagggctctgtg
gagttgcctctgctgtctgtcacacggacatatgaagttggggaccgggtcctcgtcaat
tccggcaaacataatggcctacatggatttgttgtttctgttgataccgcatcggaatca
atcatattgcattcaacgacgttacaggagtccgatgttgtgctttgtgtggatgatgtt
caacgaatgcctcacgacgaatcatatgcatcaggaaaaatcgatgaagacttgcgattg
tacgaaatagagaatcagacatcctatgatttgatcgctaccaacatattgattccggcg
cccaaatctatcgccccacaacctagatcgcgaactccaaatcctgatccaatggatgta
tccaataccactaataccgcatggtgccccggtgaagaggcagccgacagggagttgatt
cctgatggtgtgtcacctcgtatttcggaccgccattggatctcagtagcagaacgatcg
ttgacgaaaatcagaaagctttcggtcaagatagccgaacgtaccgacgatttcaatgat
cctgaagtgaatggtaaaatgggtgtcatgcatggagtaaacggtaacaaagtgagggtt
tatgtcaggcccctctccagtgaccagcagggctttttccgcgagatatattaccctttc
ctatcatacattccaccgacaaggaaaaatcagacggtagttgttgtggaagccggtcct
gatctgggatgtgttcaaaacgtcattaccacaccaggtgacttcaccgcattgggcgtg
gtttcaggcaagtacaaattcgtgaagttgaaagaaattcggaccacaggcctcgcaagt
tctctgtaa
DBGET
integrated database retrieval system
