Agaricus bisporus var. bisporus H97: AGABI2DRAFT122974
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Entry
AGABI2DRAFT122974 CDS
T03140
Symbol
AGABI2DRAFT_122974
Name
(RefSeq) hypothetical protein
KO
K12820
pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15/PRP43 [EC:
5.6.2.6
]
Organism
abv
Agaricus bisporus var. bisporus H97
Pathway
abv03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
abv00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
AGABI2DRAFT122974 (AGABI2DRAFT_122974)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
abv03041
]
AGABI2DRAFT122974 (AGABI2DRAFT_122974)
03009 Ribosome biogenesis [BR:
abv03009
]
AGABI2DRAFT122974 (AGABI2DRAFT_122974)
Enzymes [BR:
abv01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
AGABI2DRAFT122974 (AGABI2DRAFT_122974)
Spliceosome [BR:
abv03041
]
Complex A
U2 snRNP components
U2 related factors
AGABI2DRAFT122974 (AGABI2DRAFT_122974)
Complex B
AGABI2DRAFT122974 (AGABI2DRAFT_122974)
Complex C
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-SnRNP related factors
AGABI2DRAFT122974 (AGABI2DRAFT_122974)
Ribosome biogenesis [BR:
abv03009
]
Eukaryotic type
90S particles
Helicases
AGABI2DRAFT122974 (AGABI2DRAFT_122974)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
OB_NTP_bind
DEAD
Helicase_C
HA2_C
AAA_22
AAA_19
Flavi_DEAD
SRP54
Motif
Other DBs
NCBI-GeneID:
18078082
NCBI-ProteinID:
XP_006457104
JGI:
Agabi_varbisH97_2_122974
LinkDB
All DBs
Position
Unknown
AA seq
625 aa
AA seq
DB search
MIIVGETGSGKTTQIPQFVAFSDLPHTRGKMVACTQPRRVTAMSIANRVSNEMDVELGRQ
VGYSVRFEDMIEPGTTFLKYMTDGMLLREAMNDNTLAQYSTIILDEAHERTLATDILMGL
LKDLAKRRFDLKIIVMSATLDAVKFQKYFSIRSDSEASLFKVPGRTHPVEVFYTQEPEKD
YVEAAIRTVLMIHRAEEPGDILLFLTGEEEIEDACRRIKLEADDIASEDPDSVGPLVCIP
LHSSLTLQQLQRIFDPGPGPSKAGGPSRRKVVVSTNIAETSLTIDGIVYVVDPGFSKQKV
YNPRIRVESLLVSPISKASAQQRAGRAGRTRPGKCFRLYTENDFIKDLEEQTYPEILRSN
LAGTVLELVNLGIKDLVRFDYVDPPFPPGSSDFKCSNEILTITAMLSVPNVWLRPNNQRR
EADAAKEAFTVPESDLLTLLNVFNQYMLNKHDRNWAWSNYVSARALAQAENVRQQLQRIM
ERLSIDLVTTNDEVKLFTNIRKALVCGFFMQVAHKEGEKGVYLIVKDNQAVGLHPSCGFK
THPEWVIFNEFVLTTRPYIITVTEIKPEWLLENARLYFNLDSFPNGETKRALKRVEAKKF
GLEESRNETSRGRSRKDGKRKKNRE
NT seq
1878 nt
NT seq
+upstream
nt +downstream
nt
atgattatcgttggcgagacgggatctggcaaaaccactcagatacctcaatttgttgcc
ttttcggacctaccgcatacaaggggcaagatggtggcctgcactcagcctcggcgtgtc
acagctatgtccatagcaaatcgcgtgtccaacgagatggatgtcgagcttggtcgtcaa
gttggttactcggtccgttttgaggatatgatagaacctggtactactttcctcaaatat
atgacggacggtatgcttctccgtgaagccatgaacgacaatactcttgcacagtactct
accatcattcttgacgaggctcatgagcgtaccctcgcgacagatatcctcatgggcctt
ctcaaggacctcgcaaaacgccgattcgaccttaaaatcatcgtcatgtctgcaactcta
gatgcagtcaaatttcaaaagtactttagtatccgatccgactctgaagcttctctgttc
aaggttcctggacgtacccaccctgtcgaagtcttctatacacaagagcctgaaaaagac
tatgtcgaagctgctattcggacggtgttaatgattcatcgtgctgaggagccaggggac
atcctcttgttcctgactggagaagaggagattgaagatgcatgtcgcagaattaaacta
gaggcggatgacatcgccagtgaggatcccgactctgtcggtccccttgtgtgtatacca
cttcactcttcccttacccttcaacaactgcagcgtatatttgaccctggacctggacct
tccaaagccggcggaccgtcccgtcgtaaagtcgtcgtgtcaaccaacattgctgagaca
tcccttaccattgacgggatcgtgtatgttgttgaccccggattttcgaaacaaaaggtg
tataacccgcgtatccgtgttgagagcttgttggtcagtccaatctcgaaggcttcggct
cagcaacgcgctggtcgtgccggtcgtacgaggcccggaaaatgcttccgtttatatacc
gagaatgactttatcaaggacctggaggaacaaacgtatccagagattttgcgtagtaat
ctggcaggcacagttcttgaactcgttaacttgggtatcaaggatcttgttcgatttgac
tacgtggaccccccatttccccctggatcctcagattttaaatgcagcaatgaaatactg
accatcaccgctatgttgtcggttcccaatgtctggttacgaccgaacaatcagcgacgg
gaagctgatgctgcaaaggaagcgtttactgtcccagaaagcgatctcctcacgctcctc
aacgtctttaatcaatacatgctgaataagcatgataggaattgggcttggagcaactat
gtttctgcacgcgcacttgcacaagcggagaatgtgcgtcagcaacttcagcgaattatg
gaacgactcagcattgatcttgtgacaacgaatgacgaggtcaagctgttcacgaacatc
cggaaggcgcttgtgtgcggattttttatgcaggttgcgcataaggaaggagaaaaagga
gtctatcttatagtcaaagataaccaggctgttggactccatccttcgtgtggctttaag
acgcacccggagtgggtgattttcaacgagtttgtgttgacgacacgtccatatatcatc
actgtgacagaaattaagcctgaatggctgcttgaaaatgcacgactatattttaatctc
gattcctttccaaatggtgaaacaaagagagcgctcaagcgagtggaggcaaagaaattt
gggctggaggagagcaggaatgagacttcgaggggacgctcccggaaagacggaaagcgc
aagaagaacagagaatga
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