Agaricus bisporus var. bisporus H97: AGABI2DRAFT152085
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Entry
AGABI2DRAFT152085 CDS
T03140
Symbol
AGABI2DRAFT_152085
Name
(RefSeq) hypothetical protein
KO
K12813
pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16 [EC:
5.6.2.6
]
Organism
abv
Agaricus bisporus var. bisporus H97
Pathway
abv03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
abv00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
AGABI2DRAFT152085 (AGABI2DRAFT_152085)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
abv03041
]
AGABI2DRAFT152085 (AGABI2DRAFT_152085)
Enzymes [BR:
abv01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
AGABI2DRAFT152085 (AGABI2DRAFT_152085)
Spliceosome [BR:
abv03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
AGABI2DRAFT152085 (AGABI2DRAFT_152085)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
OB_NTP_bind
WHD_HA2
Helicase_C
HA2_C
DEAD
AAA_22
AAA_19
AAA_30
nSTAND_NTPase5
OB_RNR_1st
Cas3-like_C_2
Motif
Other DBs
NCBI-GeneID:
18079355
NCBI-ProteinID:
XP_006462648
JGI:
Agabi_varbisH97_2_152085
LinkDB
All DBs
Position
Unknown
AA seq
1068 aa
AA seq
DB search
MADRTTIDFVIASASSEKTAEALFNKLTSVGLPNNSAAQGFVNEVFSRAPRKRKHKHSTD
AVARKQAEKEAKALRSQQFDFLLEEEATTKDDVVETRKSSKSKEKRSEKDTASGRKDRHM
RKRDYDEKEWESDEEEKARKRWKGDEDVEGQKDEQEDEVMEFEDEDEKKEKERLNDLKDR
DAFAERMRERDKERTKKIVEDRSSKAGGAAAEAAQRRQLADDAEARTASMPSLRLHSRQE
YLTKREIQQIELLKKEIADDEALFTGMKVSKKERRELERKKELLRLVEERLKINDKWDGY
QLPEDYITEQGKIDKKKKENALYKRYEDARPKDDQFTTDVDQWEAHQTQNSTFKTGALDK
KEIVDDYEYVFDESQTIKFVMESSLPGVNMSAADKLLQKQIEEAEKRAKTIEDTRKNLPI
YLYKQDIIDAVREHQVLIVVAETGSGKTTQLPQYLHEAGFTANGQKIGCTQPRRVAAMSV
AARVADEMGTKVGYEVGYSIRFEDCTSDKTVLKYMTDGMLLREFLTEPDLASYSVLIIDE
AHERTLSTDILFALVKDIARFRPELRLLISSATVDAEKFSAYFDDAPAFYVPGRQFPVDI
HYTPQPEANYLHAAITTVFQIHMSQPKGDVLVFLTGQEEIEACHENLQETARALGNKIAE
LIICPIYANLPSEMQAKIFEPTPPGARKVVLATNIAETSITIDGVVFVIDPGFVKQNSYN
PRTGMSSLIVVPCSRASANQRAGRAGRVGPGKSFRLYTKWAFSNELEEHTVPEIQRTNLG
MVVLLLKSLGINDLIGFEFLDPPPGETLMRALEMLYALGALNDRGELTKLGRRMAEFPVD
PMLSKAIISSEQYGCTDEVLTIIAMLSESGSLFYRPKDKKLHADQARQNFMRPGGDHFTL
LNVWEQWAETNYSQQFCYEQFLQFKSLSRARDIRDQLAGLCERVEVVIESNINSNDITPV
QKAITSGYFYNTAQLQKSGDSYRTLKTNHTVYIHPSSSLFQAQPPVKTVLYYELVMTTKS
YMRQVMEIKPTWLLEVAPHYFKPADLEQLATGDKKMPKAVGASSSLPT
NT seq
3207 nt
NT seq
+upstream
nt +downstream
nt
atggcggatcggacaactatcgacttcgtcatcgcttccgcatcctctgagaaaactgcg
gaagctctttttaacaagttgacatctgtgggtttacccaacaattcggcagctcaggga
tttgtgaatgaggtgtttagtcgtgcgcctcgtaaacgcaaacataaacattcgacggat
gctgttgctcgtaaacaagcggagaaggaagccaaagcacttcgttcgcagcaatttgat
tttttgttagaggaagaagcgacgacgaaggatgacgttgtcgagacgcgcaaatcgagt
aaatctaaggagaagcgttcggaaaaagatactgccagtgggcggaaggataggcatatg
agaaaacgggattatgatgaaaaggaatgggagagtgatgaggaggagaaggcgaggaag
agatggaagggggatgaagatgttgaaggacagaaggatgagcaagaagatgaagtcatg
gagtttgaggatgaggatgagaagaaggagaaggaacggttgaatgatctcaaggatagg
gatgctttcgccgaacgaatgcgcgaacgtgacaaggagagaacgaaaaagatagtagaa
gaccgatcttctaaagctggcggtgccgctgcggaggctgcacaacgacgacaactcgct
gacgatgctgaagcgcgtactgcttcaatgccctcactacggctacattcgcgtcaagaa
tacttgacaaaacgtgaaatacaacaaattgaactgttgaagaaggagattgcagatgat
gaggcactgttcactgggatgaaagtgtcgaaaaaagaaagaagagagttggaacggaaa
aaggagctgttgcggttagtcgaggagaggctaaagattaacgacaagtgggatggatac
caattaccagaggactatatcacggagcagggcaagatcgacaagaagaagaaggaaaac
gcgctatataaacgatatgaggatgctagacccaaggacgaccagtttacgactgatgtt
gaccagtgggaagctcaccagacgcaaaatagcactttcaagactggcgctttggacaaa
aaagaaattgtcgatgattatgaatatgtcttcgacgaaagccagacgatcaaattcgta
atggagtcttccctccctggtgttaatatgagtgccgcagacaagttgttacaaaagcag
attgaggaagctgaaaaacgagctaagaccatcgaagacacacgcaagaaccttccgata
tatctatacaagcaagatattatcgacgccgtccgggaacaccaggttcttatcgttgtc
gcggaaactggctctggcaaaacaacacaactacctcaatatttgcatgaagctggtttc
acggctaatggacagaaaattggttgcacgcaaccacggcgtgtggctgctatgtccgtg
gcagctcgtgttgcagacgaaatgggcacgaaggttggctacgaagtcggttattccatc
cgatttgaggattgtaccagtgacaagacggtcctcaaatatatgacggacggcatgttg
cttcgagaatttttgacagaacctgacttggcaagctactcggttttgatcattgacgaa
gcacatgagcggactcttagtacggatatcctttttgctctcgttaaggatattgcccgt
tttcgacctgaactacgtctcctaatttcctcggccactgtagacgctgaaaagttcagt
gcatactttgatgatgcccccgctttctatgttcctggtcgccaatttcctgtcgacatc
cattacacccctcagcctgaggcgaactatctccacgctgccatcacgacagtgttccag
atacatatgtcgcagccaaaaggcgacgtcttggttttccttactggacaagaagaaatt
gaagcttgtcacgaaaacttacaggagaccgctcgtgccttagggaacaaaattgcggag
ctcatcatatgtcctatctacgccaacctccctagtgaaatgcaagccaaaatcttcgag
ccgacaccaccaggtgccagaaaggtcgttctcgctaccaacattgctgaaacgtctatc
actatcgatggtgttgtctttgtgattgatcccggctttgtgaagcaaaactcttacaat
ccacggacgggaatgtcttcactcatagtagtgccctgttcgcgtgcatctgcaaaccag
cgtgcaggacgtgcaggaagagtgggtcccggaaaatcgttccgactatacacgaagtgg
gctttctcaaatgaattggaggagcatacagttcctgagattcagagaactaatttggga
atggtggttcttcttctcaaatccttgggtatcaatgaccttatcgggtttgaatttctt
gatcctccgccaggagagacgttgatgagggcactagagatgttgtatgctctaggagcg
ctgaacgaccgcggagaactaacgaagctgggtcgacgaatggccgagttccccgtagac
cccatgttatccaaggccatcatctcgagcgagcaatatggatgtactgacgaggtcctc
acgatcatcgccatgctttcagagtctggttctttgttctacagaccaaaggacaagaaa
ttacacgcggatcaagcaaggcaaaatttcatgcgaccagggggagatcacttcacactt
ctcaacgtgtgggagcaatgggcggaaacaaattattcgcagcagttctgttatgaacag
ttcctccagttcaagagtctaagccgcgcgcgagatattcgtgatcagttagctggcctg
tgtgaacgagtggaagttgtgatcgagtcaaacatcaactcgaatgatatcacgccagta
cagaaagcaatcacctccggttatttctacaacacggcacagttgcagaagagtggagat
tcttaccgaaccctgaaaaccaaccataccgtttacattcatccctcgtcaagtttattc
caggcccagccacctgtaaagactgtattgtattatgaattggtaatgacaaccaaatca
tacatgaggcaagtaatggagatcaaaccaacatggctccttgaagttgccccgcattac
ttcaaacctgcggatctcgaacaacttgcaaccggggacaaaaagatgccaaaggctgtt
ggtgccagtagctcattgcccacttga
DBGET
integrated database retrieval system
