Agaricus bisporus var. bisporus H97: AGABI2DRAFT182217
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Entry
AGABI2DRAFT182217 CDS
T03140
Symbol
AGABI2DRAFT_182217
Name
(RefSeq) hypothetical protein
KO
K12599
antiviral helicase SKI2 [EC:
5.6.2.6
]
Organism
abv
Agaricus bisporus var. bisporus H97
Pathway
abv03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
abv00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
AGABI2DRAFT182217 (AGABI2DRAFT_182217)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
abv03019
]
AGABI2DRAFT182217 (AGABI2DRAFT_182217)
Enzymes [BR:
abv01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
AGABI2DRAFT182217 (AGABI2DRAFT_182217)
Messenger RNA biogenesis [BR:
abv03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
AGABI2DRAFT182217 (AGABI2DRAFT_182217)
mRNA degradation factors
3'-5' decay
Ski complex
AGABI2DRAFT182217 (AGABI2DRAFT_182217)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DSHCT
Ski2_N
DEAD
MTR4_beta-barrel
MTR4-like_stalk
ResIII
Helicase_C
DEXQc_Suv3
Yippee-Mis18
Motif
Other DBs
NCBI-GeneID:
18080250
NCBI-ProteinID:
XP_006454237
JGI:
Agabi_varbisH97_2_182217
LinkDB
All DBs
Position
Unknown
AA seq
1231 aa
AA seq
DB search
MNSAEQANLILHAVNPRKENAATFLNDLGLAGPPSQERINQDIESKLLLPPTEFPKQLLS
TYQVTWEREISAPSLLSLDTAPTPTSISFIRAGLDGRVVGHRETPNKRTTTGLTSTSLNR
APAPTQNFVRGKSGYVPFLPGGLDDIIIPGESTTGTKQLRKVAPGLSRGLRLPGDEEDDI
LDLDFTEHTNEEKESENTLDGVALDDGVDVSMEEQNEIDTLLPTSTAHLKLVKTPQRRTR
KADIQKRDWAHVINVNQPLSNFHELVPAMAREYPFELDTFQKQAVYHLELGDSVFVAAHT
SAGKTVVAEYAIGLAEKHMTRAIYTSPIKALSNQKFRDFKQSFSSSSVGILTGDVQINPE
ATCLVMTTEILRSMLYKGADLIRDVEFVIFDEVHYVNDAERGVVWEEVIIMLPDHVNIIL
LSATVPNTKEFADWVGRTKKKDIYVISTLQRPVPLEHYLYAGRDKFKIVDAKRTFLSNGY
SDARDALRRKQDKEREAAGLAPVQATRGRGASARGGGANSRGSTLATRGRGGRGGGPART
IHADKNVYVHLLGHLKKENLLPVVIFTFSKKRCEENARTLMNADLCTSVEKSEVHVAIEK
ALSRLKGSDKKLPQIARMRDLLSRGIGIHHGGLLPIMKEVVEILFARGLVKVLFATETFA
MGVNMPAKCVVFSNIRKHDGRNFRDILPGEYTQMAGRAGRRGLDTTGTVIILVGDSLPEQ
NTLHTMLLGTPGKLMSQFRLTYNMILNLLRVEALRVEEMIKRSFSENSSQRLLPMNQKKV
IESEKKLSTLQRLACEQCIPDIGAYYDDIHEAVNLNQKLINMAVRHPQGSKLLSSGRVVI
LRDNHFHPGNIGILLKAAPLQTLDSGRIDQNKTYFVLALVHPNVKSGDRDLDPQAVMPMW
PLEAESLVVNDGVYQLHIVPTSSISLVSNRVVKVDVDSIVQRHQISKMNEGITALSTVLQ
DWLANNEPIPEVDWSKIRALDFQETQRQRDLVRERNIARACLRCPDFSSHYAIIHGEKIL
RANIAHLKLAISDQNLELIPDYEQRIEVLKDLKFIDENSTVLLKGRVACEINSANELVLT
ELILENTLANYEPEEVVALLSCFVFQEKTEVEPSIPPRLQEGRDAILAISDSVSRVQDRN
KVASEEFRSELKFGLTEVVYEWAQGMPFEQITALTDVPEGTIVRCITRLDETCREVRDAA
RVIGDARLFKKMEEAQLKIKRDIVFAASLYF
NT seq
3696 nt
NT seq
+upstream
nt +downstream
nt
atgaacagtgcagaacaagccaatctcatcttgcatgctgtgaatccacgaaaagaaaat
gcagccactttcctgaatgatcttggcttagctggtccaccatcacaagagcgaatcaat
caggatatagaatcaaaacttctcctccccccgactgagtttccgaagcagctactttct
acttatcaagttacatgggaacgcgaaatttccgcgcccagcctattgagtctggacact
gcccctactcctacatctatctcattcatacgcgcgggactggacggacgggtcgtaggg
catcgcgagactccaaataaacgaaccacgacggggctcacttcaacctcactcaaccgt
gctccagctcctactcagaattttgttcgcggaaagtctggatacgttcccttcttgcct
ggtggattagatgatattatcattcccggagaatcgacgacgggcaccaaacagctccgg
aaggttgctcctggtctcagtagaggtctccgtttgcccggagatgaagaggatgacatt
ttggaccttgatttcaccgaacatactaatgaagaaaaggaatctgaaaacactcttgac
ggtgtagccctggacgacggtgtagacgtttcaatggaagaacaaaatgagattgacacg
ttactaccaacatcgacggcgcacctcaagctggtcaaaacccctcaacgaagaactcga
aaagctgacatccaaaaacgagattgggctcatgtaattaatgttaatcaaccgctttca
aactttcacgagctcgttcctgcaatggcgcgtgagtatccttttgaactagacactttc
caaaaacaggctgtctaccacctcgaactcggggattctgtttttgtcgcggcgcacact
tcggcaggaaagactgtcgttgcagagtacgccataggtcttgcagagaagcatatgacc
cgagccatctatacttcacccattaaagcgctgtcaaatcagaaattcagggacttcaaa
caatcattctcttcgtcttcggtgggaatccttacaggtgatgttcagatcaacccagag
gcaacttgcttggttatgacaacagagattttgagaagtatgctttacaaaggtgcagac
ttgattcgcgacgtcgagtttgtcatctttgatgaagtccattatgttaatgacgccgag
cggggtgtagtctgggaggaggttatcatcatgctcccagaccacgttaatatcatcctc
ttgtccgccactgtgccaaacacaaaagaattcgctgactgggtcggtcgtacgaagaaa
aaagacatctacgtgatttccacacttcaacgacctgtaccgttggaacactatttatat
gccggacgagacaagtttaagatcgttgacgcaaagaggacgttcctttctaatggctat
tccgatgcccgagatgctcttcggcgtaaacaggacaaggaacgcgaagccgctggttta
gcgcctgtacaggccacgagaggccgtggtgcgtcggctcggggtggtggtgccaactcc
cgagggtctacattggctactcgaggcagaggaggccgagggggaggccctgcgcgcact
atacacgcggataaaaatgtctacgttcatcttctggggcatttgaagaaagagaatctt
cttccggtcgttattttcacgttctcgaagaagcgatgtgaagaaaatgccagaacgcta
atgaatgccgatttgtgtacgtcagtggagaaaagtgaggttcacgttgctatagagaaa
gcactatctcgactgaaaggttccgataagaaattgccgcaaattgctcgcatgcgagat
cttctaagtcgtggcattggcattcaccatggcggccttttaccaatcatgaaagaggtt
gtggaaatcttatttgcacgagggttagtcaaggtactcttcgctacggaaacatttgcc
atgggagtaaatatgcctgcaaaatgtgtagttttctcaaatatacggaagcatgacggt
cgcaatttccgggatatcctacctggtgaatacactcagatggcaggaagagccgggcga
cgcggcctagatacaactggaacagtgattatcctcgtcggcgattctctacctgagcaa
aacactctccacactatgttattgggtacaccgggaaaattgatgtctcaattccgactg
acctataacatgatcctgaatctgttacgagtcgaggccctacgggtggaagaaatgatc
aagcggagtttctccgaaaacagttcacaacggttattacccatgaatcagaagaaagtc
atcgagagcgagaagaagctgtcaacactgcagaggttggcgtgcgagcagtgcattccc
gacatcggagcatattatgacgatattcatgaagcggtcaatttgaaccaaaaattgatc
aatatggctgttcgtcatccacaaggctccaagctgttgtcttctggcagagtggtcata
cttcgtgacaaccattttcatccgggcaacatcggcatcctcctcaaagcggcaccacta
cagactttggattcggggcgtatagaccaaaacaaaacgtactttgtcttggcacttgtg
catcccaatgtcaaaagcggtgatcgtgatcttgatcctcaggcagtcatgcctatgtgg
ccactagaagccgaatcactggttgttaacgatggtgtgtaccaactacacatcgttcca
acttcaagcatcagcctcgtgtccaaccgtgtcgtcaaggtcgatgttgatagtattgtc
caacgccaccaaatctctaaaatgaatgaaggcatcactgctttatcgacagttttgcag
gattggttggcaaataatgagcctataccagaagtagattggagcaagatacgtgcactc
gattttcaggagactcagcgacaaagagatctagtccgagaacggaatattgccagagct
tgccttcgttgtcccgacttttcttctcattatgccataattcatggagagaaaatcctg
cgcgccaatattgctcatctcaaattggccatctctgatcagaatttggagttgattccg
gactatgagcaacgcatcgaagttttaaaagacctcaagttcattgatgagaattccact
gtgcttctcaaaggacgggtggcttgcgagatcaactcagcgaatgaactcgtgctgact
gaactaatattggagaacacactggcaaactacgaaccggaagaggttgtcgccttgtta
tcgtgtttcgtgtttcaagaaaagaccgaggtggagccatcaattcctcctagacttcaa
gaaggcagagacgctatattagctatcagtgacagcgttagtcgagttcaagaccgaaac
aaagtcgcatcagaagagtttcgttcggagcttaagttcggccttactgaggtcgtttat
gaatgggctcagggcatgcctttcgagcaaataactgcgttaactgatgtgcccgaaggg
acaatagtgcgttgcattactcggttggacgaaacttgccgtgaagtgagggatgccgct
cgtgtcattggagacgctcgtcttttcaagaaaatggaagaagcacaacttaaaatcaaa
cgtgacattgtctttgccgccagtttgtatttttag
DBGET
integrated database retrieval system
