Agaricus bisporus var. bisporus H97: AGABI2DRAFT189825
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Entry
AGABI2DRAFT189825 CDS
T03140
Symbol
AGABI2DRAFT_189825
Name
(RefSeq) hypothetical protein
KO
K12812
ATP-dependent RNA helicase UAP56/SUB2 [EC:
5.6.2.7
]
Organism
abv
Agaricus bisporus var. bisporus H97
Pathway
abv03013
Nucleocytoplasmic transport
abv03015
mRNA surveillance pathway
abv03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
abv00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
AGABI2DRAFT189825 (AGABI2DRAFT_189825)
09122 Translation
03013 Nucleocytoplasmic transport
AGABI2DRAFT189825 (AGABI2DRAFT_189825)
03015 mRNA surveillance pathway
AGABI2DRAFT189825 (AGABI2DRAFT_189825)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
abv03019
]
AGABI2DRAFT189825 (AGABI2DRAFT_189825)
03041 Spliceosome [BR:
abv03041
]
AGABI2DRAFT189825 (AGABI2DRAFT_189825)
Enzymes [BR:
abv01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
AGABI2DRAFT189825 (AGABI2DRAFT_189825)
Messenger RNA biogenesis [BR:
abv03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
AGABI2DRAFT189825 (AGABI2DRAFT_189825)
Spliceosome [BR:
abv03041
]
Complex C
Other components
EJC/TREX
AGABI2DRAFT189825 (AGABI2DRAFT_189825)
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
AGABI2DRAFT189825 (AGABI2DRAFT_189825)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
Motif
Other DBs
NCBI-GeneID:
18081244
NCBI-ProteinID:
XP_006454572
JGI:
Agabi_varbisH97_2_189825
LinkDB
All DBs
Position
Unknown
AA seq
439 aa
AA seq
DB search
MSAHDNDDLIDYEDEHDLVPNSGATAAGTNGAPATGAVAGGDNDKDKKTFSGIHSTGFKD
FLLKPELLRAISDLGFEHPSEVQQECIPQAVLGMDVLCQAKSGHGKTAVFVLATLQQLEP
VNGEVSVIVLCHTRELAFQIKNEYTRFAKYMPDVRVSTFYGGTPVAKDAEILRDKNKCPH
IVVATPGRLNALARDKVLDAKNVKHFVLDECDKMLEQLDMRRDVQEIFRATPHHKQVMMF
SATLAKEIRVTCKKFMANPLEIFVDDETKLTLHGLQQHYVKLEEVQKNRKLNDLLDTLEF
NQVVIFVKSVARCIELDKLLVSCNFPSISIHSGLTQEERINRYTAFKAFEKRILVATDIF
GRGIDVERVNIVVNYDCPPDPDSYLHRVGRAGRFGTKGLAITFVTSESDQQVMAAIQSRF
EVAVPELPDHIDPASYMTS
NT seq
1320 nt
NT seq
+upstream
nt +downstream
nt
atgagcgcgcacgacaacgacgaccttatcgactacgaggatgagcatgatctcgtgcca
aacagtggtgcaacggctgccggcaccaacggagctcctgctacaggtgcagtagcaggc
ggggacaatgacaaggacaaaaaaacgttttctggcattcattcaacagggtttaaggac
tttttgttgaagccggaactcttacgtgccattagtgaccttggcttcgaacatccctct
gaagttcaacaagagtgtatcccacaagccgtcttgggcatggatgtcctttgccaggcc
aaatcaggccatggaaagactgcagtcttcgttcttgcaacactccagcaattggagccc
gtaaatggcgaagtctcagtcatcgtcctttgccacactcgtgaactcgcttttcaaatc
aagaatgagtacacccgctttgcgaagtatatgcccgatgttcgcgtcagcacattttat
ggtgggacccctgtcgccaaagatgccgaaattcttcgagacaagaataaatgtcctcac
atcgtcgtcgcaactcctggtcgattaaatgcccttgcgcgtgacaaggttttggatgca
aaaaacgtgaagcacttcgttctggacgagtgtgacaagatgcttgaacagcttgacatg
cgtcgtgacgtgcaagaaatctttcgagctactccccatcacaagcaagttatgatgttc
agtgctacattggcgaaggaaattcgcgtgacatgcaaaaagttcatggccaatccgctg
gaaattttcgtcgatgatgaaaccaagttgacattgcacggtttgcagcagcattacgtc
aaactagaagaagtgcagaaaaatagaaaattgaatgatttactggatacgctcgagttc
aaccaagttgtcatctttgttaagtccgttgctcgctgtattgagcttgacaaactgctt
gtttcgtgcaattttccgagtatctccattcactctggtctcactcaagaagaacgaatt
aatcgctatactgctttcaaggctttcgagaagcgcattcttgtggcgactgacattttt
ggtcggggcattgatgtggagcgtgtcaacattgttgtgaactatgactgccctccggat
ccagatagctacttgcatcgtgtgggtcgtgctggccgttttggcacaaaaggtcttgcc
atcacttttgtgacttcggagtccgatcagcaagtcatggcggcaattcaatctcgattc
gaggttgctgttccagaattacctgaccatatcgatccagccagttacatgacttcgtag
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