Agaricus bisporus var. bisporus H97: AGABI2DRAFT191077
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Entry
AGABI2DRAFT191077 CDS
T03140
Symbol
AGABI2DRAFT_191077
Name
(RefSeq) hypothetical protein
KO
K03144
transcription initiation factor TFIIH subunit 4
Organism
abv
Agaricus bisporus var. bisporus H97
Pathway
abv03022
Basal transcription factors
abv03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
abv00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
AGABI2DRAFT191077 (AGABI2DRAFT_191077)
09124 Replication and repair
03420 Nucleotide excision repair
AGABI2DRAFT191077 (AGABI2DRAFT_191077)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
abv03021
]
AGABI2DRAFT191077 (AGABI2DRAFT_191077)
03400 DNA repair and recombination proteins [BR:
abv03400
]
AGABI2DRAFT191077 (AGABI2DRAFT_191077)
Transcription machinery [BR:
abv03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
AGABI2DRAFT191077 (AGABI2DRAFT_191077)
DNA repair and recombination proteins [BR:
abv03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
AGABI2DRAFT191077 (AGABI2DRAFT_191077)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Tfb2
Tfb2_C
Helicase_C_3
FTR1
Motif
Other DBs
NCBI-GeneID:
18081678
NCBI-ProteinID:
XP_006458986
JGI:
Agabi_varbisH97_2_191077
LinkDB
All DBs
Position
Unknown
AA seq
467 aa
AA seq
DB search
MPALQRPSEADKKDSPHALLPFLQTQSQTTLTRLYQRPSSCLSVFRLLAPLERQIVMNLL
WLESAIATSTMVAWVQRDGRKLYEEALGNLSRLHILPNSAAKLALNFTFKTSLRQALTGG
GTSGSFGVPAEKDEHSGPSIKTLDSFALERWETILHYMVSSGTGQQPAKPSQGVLFLLQR
SSLMSSFHGGPLQITSSGFQFLLHSPHAQLWDLLLQYLHLAQERQMDLVEVLGFLFMLST
MELGREYLTENLSTTQGVLLEDLRDYGLIWQSKPKSRRFSPTRLGTTLTSSSPPLPTTIS
ASSGPLDGFIVLETNYRIYAYTDNPLQTAVLNLFVSLKYRFPNLVVGMITRDSVRRALMN
GITADQIISYLITHAHPQMRKNNPLLPVTVQDQIRLWELEKNRLKSSEGYLYTAFTSQAD
YDLVLNYAKQLDVVLWENAAKRCFFGSLEGHLRIKEFIERRTQNSNS
NT seq
1404 nt
NT seq
+upstream
nt +downstream
nt
atgcccgcgttacagagacctagtgaagcagacaagaaagattcaccgcatgcattactt
ccattcctccagacgcagtcacaaactacgttgacgagactctaccaacggccctcttcg
tgtctttcagtatttcgtcttctggcgcctctggaaaggcaaattgtaatgaatctgcta
tggctcgagtccgcaattgctacatcaaccatggttgcctgggttcaacgagatggacga
aagctttacgaagaagcactaggcaacctctcccgacttcatattcttcccaattccgct
gcaaagctggctctgaattttaccttcaagacgagcctgcggcaagcacttacaggaggc
ggaactagtggaagtttcggtgttccagcggaaaaggacgagcactcggggcctagcatc
aagaccttggatagcttcgccctagaacgttgggagacgattttacactatatggtctct
tctgggaccggtcaacaacctgctaaaccgtctcagggtgtcctctttttactccagcgt
agtagtttgatgtccagctttcacggaggacccctacagatcacatcgtcgggattccaa
tttctcctgcattcacctcatgcacagttgtgggacctgcttctccaatatctacattta
gcacaagaaaggcagatggaccttgtcgaagttctaggatttctatttatgttatctacc
atggagctcggacgagaatatctgactgagaatttgagcaccactcaaggcgttttactt
gaagatctccgtgactatgggctgatttggcaaagtaaacctaaatcgcggcgtttcagc
ccgactcgacttggcacaacattgacgtcttcttcgccaccacttcccacgaccatcagt
gcgagttcaggacccttagatggatttatcgtcctcgaaaccaattatcgaatatacgcc
tatacagataacccactccaaaccgccgtactcaacctcttcgtatcgttgaaataccgc
tttcctaacttagttgttggcatgatcacaagagatagtgtcagaagagcgctcatgaat
ggcatcaccgccgaccaaatcattagctacctgattacgcatgcacacccgcaaatgcgg
aagaataatccccttctgcccgttaccgttcaggatcagattcgactatgggaattggag
aaaaatcggctcaaatcgagcgaaggttacttgtatactgcatttacttcccaggccgac
tatgacttggtactcaattacgcaaaacagttggacgtagttctatgggagaatgcggcg
aagcgctgcttttttggcagtttggagggacacttgagaatcaaggagttcatagagagg
cgaacgcaaaattctaattcatag
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