Agaricus bisporus var. bisporus H97: AGABI2DRAFT192008
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Entry
AGABI2DRAFT192008 CDS
T03140
Symbol
AGABI2DRAFT_192008
Name
(RefSeq) hypothetical protein
KO
K14400
pre-mRNA cleavage complex 2 protein Pcf11
Organism
abv
Agaricus bisporus var. bisporus H97
Pathway
abv03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
abv00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
AGABI2DRAFT192008 (AGABI2DRAFT_192008)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
abv03021
]
AGABI2DRAFT192008 (AGABI2DRAFT_192008)
03019 Messenger RNA biogenesis [BR:
abv03019
]
AGABI2DRAFT192008 (AGABI2DRAFT_192008)
Transcription machinery [BR:
abv03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
AGABI2DRAFT192008 (AGABI2DRAFT_192008)
Messenger RNA biogenesis [BR:
abv03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
AGABI2DRAFT192008 (AGABI2DRAFT_192008)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Pcf11_C
CID
zf_PCFS4
Prion
HNF-1_N
Motif
Other DBs
NCBI-GeneID:
18081995
NCBI-ProteinID:
XP_006460247
JGI:
Agabi_varbisH97_2_192008
LinkDB
All DBs
Position
Unknown
AA seq
643 aa
AA seq
DB search
MSLYSQNYYGPSYGGPSYAAPAAYQYQYPQQPGHPQPIPHPPPNPVFIDPAAFRRDYSSR
LDQLQFNSRPVIQSLSFYAQDYSRYADIVAQCLDSHIRKVPPWMKLPAFYLLDAISKNVY
EPYARVFASFVIPLFLDTYRMVDDGTRSKMDEMLLTWRTGAPNGKELFGLGPQMAIERGI
WGDQAGPGQITKTQVMSELNFALQAKERAIQANPNDIATKHHIQVLLQLRSLVEAGVSQE
ELTQILTQLRGMIRSSAAQPPVPSQSQWSVPQLPSPAPNTYPSVPTGFPSVSSAFPAAKT
EATQSILPPASVSTSSTSVDTAQLNITNILSSLMKSGLVSSSAEDPTALKTESEESEEAK
SASSSMEDMNAIKEAQVHYRKRILAEKMEANLVENSVDDPHVPIPDLLYDYLSLQCQQCG
IRYPDTTLGKKRLEDHLDLHFKQNRKLNQSFGRGHDRSWFTSVEDWVQELSTGQSQRSLR
MRDADEKVAVPTEKVRSQTNLKSQYVTVPPGDEAKPLSCAICKEVLQIEFLEDEEEWVWR
NAVKKDDRVYHATCHAEAAAANNLVSRFKNETGIGSRGSTPEVVSSRSTPPLVRATRSPS
RSPTSSSSKMAAGVKRKIEHDGPADMNDWDQTPPAKKLALAQS
NT seq
1932 nt
NT seq
+upstream
nt +downstream
nt
atgtcactttattcgcagaattattatggtccatcatatggtggaccttcgtatgctgct
ccggccgcatatcagtaccagtatcctcagcagcctggtcatcctcagcctatacctcat
ccccctccaaaccctgtcttcattgacccagcagcttttcgcagggattatagcagtcgc
ctcgatcaactgcagttcaattctcgtccagttattcaaagcttgtctttttacgcgcaa
gattattcccgatacgcagatatcgtggcgcaatgtttggatagtcacatccggaaggtc
cctccctggatgaagcttcccgccttctatctcctcgacgcgatctcgaagaatgtctat
gagccgtatgctcgtgtattcgcatccttcgtcatccccctttttctcgatacttatagg
atggtcgatgatggcactcgcagcaaaatggacgagatgctactgacctggcgcaccggc
gcgcccaatggaaaagaattattcggtcttggaccccaaatggccatcgaacggggcatc
tggggcgatcaagctggtcctggccagattacgaagactcaagtcatgagcgagctaaat
tttgctcttcaagcaaaagaacgagctatccaggccaacccgaatgatattgccacaaag
catcacatacaagttcttcttcagttgcgaagcttagtagaagcgggcgtatcccaagag
gaattaacgcagatcctcacccaactccgtggaatgattcgttcatcggctgctcaaccg
ccagtcccttcccaatcccaatggtctgttccacagcttccatcaccggcccctaataca
tatccttctgtcccgaccgggtttccttcggtttcatccgcttttcctgcggcgaagact
gaggctacacagtctatattgccacctgcctcagtgtctacatcctcgacctctgttgat
acagctcagctcaatattactaacattttatcatcattgatgaagtccgggcttgtttcg
tcctccgcggaagatcccactgctttaaaaacagaatcagaagaatcagaagaagcaaaa
tctgccagctcgtcgatggaagatatgaatgctattaaggaggctcaggtccattaccgc
aagcgaattctagccgagaagatggaggcaaatttagtcgaaaactctgtagatgaccct
catgttcctatcccggacctactctatgattatctctcgctccaatgtcaacaatgtgga
attcgataccctgatactactttaggaaagaaacgactggaagatcatctagacctacat
ttcaagcagaaccgcaagttaaatcaaagctttggccgaggacatgaccggagttggttt
accagcgttgaggattgggtccaggaactctcaactggtcaaagtcagcgatctctccgg
atgagagacgctgatgagaaggtcgccgttccgaccgagaaagtgcgatcacaaactaat
ctaaagtcacaatacgtcactgttccacctggtgatgaagctaagcctttatcgtgcgcg
atttgtaaagaagtattacagattgaatttcttgaggacgaagaggaatgggtttggcgg
aacgcagttaagaaagatgatagagtatatcatgcaacatgtcatgcagaggcagcagca
gcaaataatctagtgtcgcgattcaaaaatgagacaggaataggaagtcgaggtagtaca
cctgaggtagtatcgtcgcgttcaacgcccccgcttgtgagagcaacaaggtcaccctca
agatcaccaacatcgtcatcatccaaaatggccgccggtgttaaacgcaagattgaacat
gacggacccgccgacatgaacgactgggaccaaacgccacctgcaaaaaagttggctttg
gcacaatcatga
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integrated database retrieval system
