Agaricus bisporus var. bisporus H97: AGABI2DRAFT192108
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Entry
AGABI2DRAFT192108 CDS
T03140
Symbol
AGABI2DRAFT_192108
Name
(RefSeq) hypothetical protein
KO
K13025
ATP-dependent RNA helicase [EC:
5.6.2.7
]
Organism
abv
Agaricus bisporus var. bisporus H97
Pathway
abv03013
Nucleocytoplasmic transport
abv03015
mRNA surveillance pathway
abv03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
abv00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
AGABI2DRAFT192108 (AGABI2DRAFT_192108)
09122 Translation
03013 Nucleocytoplasmic transport
AGABI2DRAFT192108 (AGABI2DRAFT_192108)
03015 mRNA surveillance pathway
AGABI2DRAFT192108 (AGABI2DRAFT_192108)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
abv03019
]
AGABI2DRAFT192108 (AGABI2DRAFT_192108)
03041 Spliceosome [BR:
abv03041
]
AGABI2DRAFT192108 (AGABI2DRAFT_192108)
03009 Ribosome biogenesis [BR:
abv03009
]
AGABI2DRAFT192108 (AGABI2DRAFT_192108)
03012 Translation factors [BR:
abv03012
]
AGABI2DRAFT192108 (AGABI2DRAFT_192108)
Enzymes [BR:
abv01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
AGABI2DRAFT192108 (AGABI2DRAFT_192108)
Messenger RNA biogenesis [BR:
abv03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
AGABI2DRAFT192108 (AGABI2DRAFT_192108)
mRNA cycle factors
Stress granule specific factors
AGABI2DRAFT192108 (AGABI2DRAFT_192108)
Spliceosome [BR:
abv03041
]
Complex C
Other components
EJC/TREX
AGABI2DRAFT192108 (AGABI2DRAFT_192108)
Ribosome biogenesis [BR:
abv03009
]
Eukaryotic type
90S particles
Helicases
AGABI2DRAFT192108 (AGABI2DRAFT_192108)
Translation factors [BR:
abv03012
]
Eukaryotic type
Initiation factors
eIF-4
AGABI2DRAFT192108 (AGABI2DRAFT_192108)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
AAA_22
UvrD-helicase
TniB
DUF1871
Motif
Other DBs
NCBI-GeneID:
18082033
NCBI-ProteinID:
XP_006460368
JGI:
Agabi_varbisH97_2_192108
LinkDB
All DBs
Position
Unknown
AA seq
396 aa
AA seq
DB search
MAGINAGDEKLVFESSEAVSVVATFDDLALKEDLLRGIYAYNFEKPSAIQQRAILPITQG
RDVIAQAQSGTGKTATFSISILQSIDVTVRETQALVLSPTRELATQIQSVVLALGDYMNV
QCHACIGGTSIGEDIRKLEYGQHVVSGTPGRVFDMIRRRSLRTRNIKMLVLDEADELLNK
GFKDQIYDVYRYLPPATQVVLLSATLPYDVLEMTTKFMTDPIRILVKRDELTLEGIKQFF
VAVEKEDWKFDTLCDLYDTLTITQAVIFCNTRRKVDWLTEKMRASNFTVSSMHGDMVQKE
RDAIMAEFRSGTSRVLITTDVWARGIDVQQVSLVINYDLPANRENYIHRIGRSGRFGRKG
VAINFVTVDDVRILRDIEQFYSTQIDEMPVNAAELI
NT seq
1191 nt
NT seq
+upstream
nt +downstream
nt
atggccggaatcaacgctggagacgagaaactcgtgttcgagtcctcagaggccgtctct
gtcgtcgccacgttcgacgacctcgccctcaaggaagaccttctccgcggcatctacgcg
tacaactttgaaaaaccctccgccatccagcagcgcgccatcctccccatcacacaaggt
cgcgacgtcattgcccaagcccagtccggtaccggtaaaaccgcaaccttttccatctcc
atcctccagtccatcgatgtcaccgtccgcgaaacacaggccctcgtcctctcccccacc
cgcgaactcgcaacccagatccagtccgtcgtgctcgcactgggtgactacatgaatgtc
cagtgccatgcctgcatcggcggaacgtccataggcgaagacatcagaaaactcgagtat
ggccagcacgttgtctctgggacacccggtcgtgtctttgacatgatcaggcgccgcagt
ttacggacacgaaacatcaaaatgctcgtccttgatgaagccgacgagctcctcaacaag
ggcttcaaagaccaaatttacgacgtctatcgctacctccctcctgctacccaggtagtc
cttctgagtgccacgcttccgtatgacgtgctggagatgaccaccaaattcatgacggac
cctatccggatcctcgtcaagcgtgatgaactgacactcgagggtataaaacaattcttc
gtcgcagtagaaaaggaggactggaagtttgataccctctgcgatctttatgacaccctg
accatcactcaagctgtcatcttctgcaacactcgtcgcaaggttgactggctgactgaa
aaaatgcgtgcttcaaacttcacggtatcgtcgatgcacggtgacatggtccaaaaagaa
cgtgacgctatcatggccgaattccggagtggtacatcacgggtcttgattaccaccgac
gtttgggctcgtgggattgacgtgcagcaggtttccctggttattaattatgatcttcct
gccaaccgtgaaaactatatccataggattggtcgatcaggtcgtttcggccgcaagggt
gtagccatcaacttcgtgaccgtcgatgatgttcgtatccttcgcgatatcgaacaattc
tatagcactcaaattgatgaaatgcctgtcaatgctgccgagttaatctag
DBGET
integrated database retrieval system
