Agaricus bisporus var. bisporus H97: AGABI2DRAFT199759
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Entry
AGABI2DRAFT199759 CDS
T03140
Symbol
AGABI2DRAFT_199759
Name
(RefSeq) hypothetical protein
KO
K12867
pre-mRNA-splicing factor SYF1
Organism
abv
Agaricus bisporus var. bisporus H97
Pathway
abv03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
abv00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
AGABI2DRAFT199759 (AGABI2DRAFT_199759)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
abv03019
]
AGABI2DRAFT199759 (AGABI2DRAFT_199759)
03041 Spliceosome [BR:
abv03041
]
AGABI2DRAFT199759 (AGABI2DRAFT_199759)
Messenger RNA biogenesis [BR:
abv03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
AGABI2DRAFT199759 (AGABI2DRAFT_199759)
Spliceosome [BR:
abv03041
]
Complex B
Other components
Prp19-related factors
AGABI2DRAFT199759 (AGABI2DRAFT_199759)
Complex C
AGABI2DRAFT199759 (AGABI2DRAFT_199759)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
HAT_Syf1_CNRKL1_C
HAT_Syf1_M
HAT_Syf1_CNRKL1_N
HAT_PRP39_N
HAT_PRP39_C
TPR_19
TPR_15
Mad3_BUB1_I
PSII_Pbs27
ARM_TT21_C
DUF3130
Motif
Other DBs
NCBI-GeneID:
18083753
NCBI-ProteinID:
XP_006458271
JGI:
Agabi_varbisH97_2_199759
LinkDB
All DBs
Position
Unknown
AA seq
972 aa
AA seq
DB search
MPGEPSSYNSLASLFPLAHPVPSPLTHPDLLTHKDLHREEDLLRNPNSFRAWWTSLQATR
EACLAEQKLEGSLDVSDATRALLGPLASPLARLNFQRLTYLYESALVHFAGSFKLWKSYL
TMRMSFVCGKPVIRKRAGGKKKLPEMGDALEDELEDLEKWEGPLDPIVGWEEWKLLAATF
ERALMYLPKLPRLWLMYISIFFHPACPPNLSLTHARRTFDRALRTLPPSLHARIWTRYLL
LSERKGGVTAFSVYRRYLSVDPSLSERYVALLLNPVNAEPRPLEAAKLLLQLARNASKGQ
YISPEGKSPYQLLESFIDVVEKFSEQVGLDVEETLKSNQSIAEADSLKKVPESASVNGSG
ANINDTTKTVDPDEDPLNPRKFNIEDIIKKDGLGVYKDQAGRLWVGLATYWIKRAEFDRA
KHTFEAGLSSVLTVRDFNQIFDSYGEFGQSLMDALMESLKEEEDDEEIAETEKELDQQMK
DFEDLADRRPFLLNDVMIRRNPNDVQEWEKRVALWGEDDEKVAETYTQAFETINPRKATP
NFHRLYIAFARFYEEGGVSGKAEPDLQSARKILEKATKVNFRAVDDLAEIWCEWAEMELR
HDNDDEAIRVMQRAAAVPKNTKINYHDHSLSVQARLFKSLKLWSFYVDLEEAIGTVESAK
AVYDKILELRIANAQIIVNYAAFLEENKYFEESFKVYERGVELFTFPVSFEIWNIYLSKF
IKRYGGTKLERARDLFEQALEKCPAKSCKPIFLLYAKLEEEHGLAKRAMSIYERATQEVN
DTDKFEMYKIYIAKATENFGLPATRPIYELAIEILPDRQTAEMCLHFAALERKLGEIDRA
RAVYAHASQFCDPRIHSRFWSEWNSFEIETGSEDTFREMLRIKRSVQAQFNTEASYLAAQ
TVAATQGSQISKENGEEPQDAMAAAEKQAGKGPAFVAAKATGSFKPAESNNVAASDQPSN
ADEIHISDDEDI
NT seq
2919 nt
NT seq
+upstream
nt +downstream
nt
atgcctggagagcccagctcgtacaacagcctcgcctctctctttcccctcgcacatccc
gttccttctcccctcacccacccagacctcctcacccacaaagatctccaccgagaggag
gacctcctgcgcaacccaaattcttttcgcgcgtggtggacatctctccaggcgacacgg
gaagcctgcctcgctgagcaaaaactagaaggaagtcttgatgtctctgacgctactcgc
gctctcttaggccctctagcatcgccgttagctcgcctcaatttccagcggttaacttac
ttgtacgaatctgcccttgtgcactttgcaggctctttcaaactatggaaatcctatttg
actatgcgtatgtcctttgtttgcggaaagccagtcattagaaagcgggccggaggaaag
aagaagcttcctgagatgggagacgcacttgaagatgaacttgaggatctggaaaagtgg
gaaggaccgttggatccaattgttggttgggaggaatggaaattattggctgcaacgttt
gaaagggcgcttatgtatcttccaaaattgccgcgactgtggctcatgtacatatcgatc
ttctttcaccccgcttgtccgccgaatctttccctgacacatgcgcgacgtacgttcgac
agagcactacggacacttcctccttccttacacgcgcgtatatggacgcgatacttgctg
ttatccgaaaggaaaggtggtgtgactgccttctccgtttacaggcgatatcttagcgtc
gatccctcgctgtcagagcgatacgttgcattgctgctgaaccctgtgaatgccgagccc
cggccactggaagcggccaagctcctcttacaactggcgcgaaacgcctccaaaggtcaa
tacatcagtccggaaggcaagagcccctaccagctactggagtccttcatcgacgttgtt
gaaaaattctcggagcaagttggacttgatgtggaagaaacattaaaatccaatcagtca
attgctgaagcagattctttgaaaaaagttcctgaatccgcgtccgtcaatggatccggg
gcaaatatcaatgatactacgaaaactgtggaccctgatgaagatcctctcaacccccga
aaattcaatatcgaagatataatcaaaaaggacggtttgggtgtctacaaagaccaggct
gggcggctttgggtcggattagcaacctattggataaaacgtgctgaattcgatagagcc
aaacatacctttgaggccggcctcagtagcgtccttaccgtccgtgattttaaccagata
ttcgattcctatggcgaattcggacagtctttgatggacgccctcatggaaagccttaaa
gaggaagaagacgatgaggaaattgccgaaacagagaaggagcttgatcaacagatgaaa
gactttgaagacctggctgacagacgacctttcttgcttaacgatgtgatgattaggcgt
aatccaaatgatgtccaagaatgggaaaaacgtgtcgcattgtggggagaagatgacgaa
aaagttgccgaaacttatacacaagctttcgaaactatcaatcctcgtaaagccactccc
aactttcaccggttgtatatagcttttgcgaggttctacgaggaaggtggcgtgtcaggg
aaagccgagcccgaccttcaatctgctcgaaaaatcttggagaaagctaccaaagtcaac
ttcagggctgtcgatgatcttgccgaaatttggtgcgaatgggcagagatggaacttcga
cacgacaatgatgatgaggccatccgagtaatgcaacgagccgctgctgtgcctaagaat
acgaaaatcaactaccacgaccactcactttctgttcaagcacgcctcttcaaatcattg
aagctttggtcattctatgtagatctcgaagaagctatagggacagtggagtcagctaag
gctgtatacgacaagatcctcgagctgcgcattgccaatgcccagataatcgtcaattat
gccgctttcctcgaagagaataaatacttcgaggaaagcttcaaagtttatgaacggggt
gttgagttgttcacattccctgtttcctttgaaatctggaatatctatttgtctaaattc
atcaagcgctacggtggaaccaaacttgaacgcgctcgtgatctctttgagcaggcactg
gaaaaatgtcccgccaagtcatgcaaacccatattcctcctttatgccaaattagaagag
gagcacgggcttgccaagcgcgcgatgtccatctacgagcgtgcgacccaagaggtcaat
gatactgacaagttcgagatgtacaaaatttatattgcgaaggctactgaaaacttcggg
ctaccagccaccaggcctatatatgaacttgccattgaaattcttccggatcgtcaaacg
gcagaaatgtgccttcactttgctgccctagaacgcaaactcggagagatcgacagagct
cgtgcagtttatgcacatgcatcacaattttgcgaccctcgcatccattcacgcttttgg
agcgaatggaattcatttgaaattgaaacggggtcggaagatacgtttcgagaaatgctc
agaatcaaacgaagtgtacaagctcaattcaacactgaagctagttatctggctgctcaa
actgtagcggctactcagggcagtcaaatatcaaaagaaaatggtgaagagcctcaagat
gctatggctgctgcggaaaagcaggctgggaaaggacctgcctttgtcgctgcaaaggcg
actggatcattcaagcccgcggagagtaataacgtcgctgcttccgaccagccgagtaat
gctgatgagattcacatttccgatgatgaagatatttaa
DBGET
integrated database retrieval system
