Agaricus bisporus var. bisporus H97: AGABI2DRAFT210001
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Entry
AGABI2DRAFT210001 CDS
T03140
Symbol
AGABI2DRAFT_210001
Name
(RefSeq) hypothetical protein
KO
K12572
PAB-dependent poly(A)-specific ribonuclease subunit 3
Organism
abv
Agaricus bisporus var. bisporus H97
Pathway
abv03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
abv00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
AGABI2DRAFT210001 (AGABI2DRAFT_210001)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
abv03019
]
AGABI2DRAFT210001 (AGABI2DRAFT_210001)
Messenger RNA biogenesis [BR:
abv03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
AGABI2DRAFT210001 (AGABI2DRAFT_210001)
mRNA degradation factors
3'-5' decay
Pan complex
AGABI2DRAFT210001 (AGABI2DRAFT_210001)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Pan3_PK
Pkinase
PK_Tyr_Ser-Thr
Motif
Other DBs
NCBI-GeneID:
18084510
NCBI-ProteinID:
XP_006455571
JGI:
Agabi_varbisH97_2_210001
LinkDB
All DBs
Position
Unknown
AA seq
632 aa
AA seq
DB search
MAFFARPQSTAVRISQPTDDPEPRRDTVQRQCRNIVIYGHCKYQDKGCQYFHPPPDAPAS
PPPTAALSAHAINAPIFVPKAAAVPHDDYDEFSYTAADAAAVDDLTSGVSDLSPLCSQLI
SPRATMTIPSTNTSLPTTQTASTLSISILPPFFASPCLNYLLYTPSLPDDSSTNTHFIPP
SSQLRQHLQSQSESIRTVAPPGLPDECQGYHSFVPLEPTSGERRKLGNWYSTVYRAIRVS
DGRPYALRRIENYRLMHQSAFSAIELWSSIRHPSIVPVQEAFTTKAFNDNSLLVSYAYFP
DAQTLYDVHFKSINGAPPPPPPSSVPPSAGRRARGPSDPASELEPQNSVIPERTLWSYIV
QIASAIKKVHETGNPVRMIDATKILVTGQNRIRISSCGIIDLLMHNSLTLQQSIEYNATL
LQEDLTLFGRLVFSLSCGTIHAWTAPQFQKSLDWMTRWYQPDLKSVALYLISKPGVHKLK
TIDHLMEMIRPKVQAEMEEALLATDRLQQDLLSELENARLVRLLCKFGFINERPEFALEP
RWSETGDRYIIKLFRDYVFHQVDEHGNPIVNMSHVLTCLNKLDAGSEEKVMLVSRDDTSC
LVVSYKEIKACMEGAFSDLARPSTMVTFQSAR
NT seq
1899 nt
NT seq
+upstream
nt +downstream
nt
atggcctttttcgctcggccccagtccaccgcagtccgcatctcacagcccacagacgac
ccagagccaaggagagacaccgtgcagcgacagtgcagaaacattgtgatctatggccac
tgcaagtatcaggacaagggctgccagtactttcatccccctcccgacgcccccgccagt
cctccacccaccgccgccctctctgcccacgccatcaacgcccccatctttgtccccaaa
gccgccgccgtcccccacgacgactatgacgagttttcgtacaccgccgccgatgccgct
gccgtcgacgatctcacctcgggcgtaagcgatctctcccctctctgctcccagctcatc
tctcccagggctactatgacgattcccagtaccaatacgtccctccctacgacccaaacg
gcatcgactctctctatctccatcctcccccctttcttcgccagcccgtgtctcaattat
ctcctctacacaccctctctcccagacgactcttccaccaacacccatttcatccccccc
tcttcccaactccgccaacaccttcaatctcagagtgaatccattcgcaccgtcgctcct
ccaggccttccagacgaatgccaaggctatcactccttcgtccccctcgaacccacttcc
ggtgaacgtcgcaaattaggcaactggtactctaccgtctatcgtgccatacgtgtatcc
gacggtcgaccctatgctctccgtcgcatcgaaaattaccgattgatgcatcaatctgct
ttttccgcaattgaattatggtcctccattcgtcatcctagcattgttcccgttcaggaa
gcttttaccacaaaagccttcaatgataattccctgctcgtatcctacgcttacttccca
gacgcccaaaccctctatgacgtccattttaaatctatcaacggcgcccctcccccacca
cctccatcctccgtgcctccttctgcaggaagacgtgcgaggggacctagtgaccctgca
agtgaactggaaccacaaaactcggtcattccagaacgtaccttgtggtcgtatatcgtc
caaatcgcaagtgccatcaaaaaagttcacgagacgggtaatcctgttcgtatgatcgac
gccacaaaaatactcgtcaccggtcaaaatcgtatacgaatatcatcttgtggtatcatc
gatcttctcatgcataacagtctcactctgcaacaatccatcgaatacaatgctacgctt
cttcaagaagatcttactctttttggaagacttgtgttttcgttgagttgtgggactatt
catgcgtggacggcaccccaatttcagaaaagtttggattggatgacgaggtggtatcaa
ccggatttgaaaagcgtggcattgtatttgataagtaaacctggggtacacaaattgaag
acgattgatcatttgatggagatgattagaccgaaagtgcaagccgaaatggaagaagct
ttacttgcgacggatcgacttcaacaagatttactcagtgaactcgaaaacgccagactt
gtccgtttgttatgtaaatttgggtttataaacgaacgacccgagttcgctttggaacct
cggtggtcggaaacgggggatagatatataatcaagttgtttagagattatgtgtttcat
caagtggatgaacatgggaatcctatagtgaacatgtcgcatgtcttgacatgtttaaac
aagttggatgcgggatcggaagagaaggtgatgttggtgtcgagagatgatacgagttgt
ttggtggtgagttataaagaaattaaagcgtgtatggaaggtgcttttagtgaccttgcg
agaccgagtacgatggtgacgtttcaatctgctcgatga
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