Agaricus bisporus var. bisporus H97: AGABI2DRAFT212147
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Entry
AGABI2DRAFT212147 CDS
T03140
Symbol
AGABI2DRAFT_212147
Name
(RefSeq) histone deacetylase complex catalytic component RPD3
KO
K06067
histone deacetylase 1/2 [EC:
3.5.1.98
]
Organism
abv
Agaricus bisporus var. bisporus H97
Pathway
abv03082
ATP-dependent chromatin remodeling
abv03083
Polycomb repressive complex
Brite
KEGG Orthology (KO) [BR:
abv00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
AGABI2DRAFT212147 (AGABI2DRAFT_212147)
03083 Polycomb repressive complex
AGABI2DRAFT212147 (AGABI2DRAFT_212147)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
abv03036
]
AGABI2DRAFT212147 (AGABI2DRAFT_212147)
Enzymes [BR:
abv01000
]
3. Hydrolases
3.5 Acting on carbon-nitrogen bonds, other than peptide bonds
3.5.1 In linear amides
3.5.1.98 histone deacetylase
AGABI2DRAFT212147 (AGABI2DRAFT_212147)
Chromosome and associated proteins [BR:
abv03036
]
Eukaryotic type
Histone modification proteins
HDACs (histone deacetylases)
Class I HDACs
AGABI2DRAFT212147 (AGABI2DRAFT_212147)
HDAC complexes
Sin3A-HDAC complex
AGABI2DRAFT212147 (AGABI2DRAFT_212147)
BRAF-HDAC complex
AGABI2DRAFT212147 (AGABI2DRAFT_212147)
REST complex
AGABI2DRAFT212147 (AGABI2DRAFT_212147)
SHIP complex
AGABI2DRAFT212147 (AGABI2DRAFT_212147)
MiDAC complex
AGABI2DRAFT212147 (AGABI2DRAFT_212147)
Polycomb repressive complex (PRC) and associated proteins
Noncanonical PRC1 (PRC1.6)
AGABI2DRAFT212147 (AGABI2DRAFT_212147)
Heterochromatin formation proteins
Other heterochromatin formation proteins
AGABI2DRAFT212147 (AGABI2DRAFT_212147)
Chromatin remodeling factors
NuRD complex
AGABI2DRAFT212147 (AGABI2DRAFT_212147)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Hist_deacetyl
Thioredoxin_6
Motif
Other DBs
NCBI-GeneID:
18084668
NCBI-ProteinID:
XP_006456928
JGI:
Agabi_varbisH97_2_212147
LinkDB
All DBs
Position
Unknown
AA seq
427 aa
AA seq
DB search
MSKRRVAYYFDPDVGAYTYGLGHPMKPHRIRVTHDLVAAYDMLPKMHVLRPKRASPEDIS
AFHTDEYVHFLTRVTPETAEELTYHGTRFLVGDDNPGFEGLFEFCSISAGGSICAAQRIS
SGAADIAINWAGGLHHAKKREASGFCYVNDIVLGILELLRSYPRVLYIDIDCHHGDGVEE
AFYTTDRVMTCSFHKFGEYFPGTGTQEDKGRGKGKGYAINVPLKDGITDESYKSVFEPVI
AKILDVFQPSAVVLQCGADSLAGDKLGCFNVTMKGHAHCVQFLRQQNIPLILLGGGGYTV
KNVAKTWTFETACALGIEDEIDFSLPWNEYFEWFAPRYRLEVLGNNMDDLNTKDNSLDRV
RVTALEQLHDLIHAPSVQMHDVPRETVGHHLGLVKDEEGWDELDERLARKLHQSSILHIL
FFSNYFI
NT seq
1284 nt
NT seq
+upstream
nt +downstream
nt
atgtcaaagcggagggtggcgtattatttcgacccggatgtgggcgcgtacacgtatggc
ctcggtcaccccatgaagccccaccggattcgggtcacccacgacctcgtcgccgcatac
gacatgctccccaagatgcatgtcctcagacccaagcgtgcttctccagaagacatctcc
gcctttcataccgacgaatatgtccatttcctcacccgtgtcactccagagacagccgaa
gaactcacctaccatggcaccagattccttgttggagatgataaccccggcttcgaaggt
ctattcgaattttgttccatatccgccggtggttccatctgtgctgcccaacgaatatcc
tcaggtgcagccgacatcgccatcaactgggccggcggtctccaccacgccaaaaaacgt
gaagcctcaggtttctgctacgtcaacgacatcgtcctcggtatcctcgaacttcttcgt
tcctaccctcgtgttctctacatcgatatcgattgtcatcatggtgatggtgttgaagaa
gccttttacactactgatcgtgttatgacttgtagttttcataaatttggtgagtatttt
cctgggacggggactcaggaggataaggggagagggaaagggaaggggtatgcgattaat
gtacctttgaaggatgggattacggatgaatcgtataaaagtgtgtttgaacctgtgatc
gcaaaaattctagacgtattccaaccctcagcagtcgtactccaatgtggcgccgactct
ttagcaggagacaaactcgggtgtttcaacgtcacaatgaaaggacacgcccattgtgta
caattccttcgtcaacagaatatcccattgattttacttggaggtggtggatatactgtg
aagaatgttgcaaagacatggacgtttgaaacggcgtgtgcattggggattgaagatgag
attgatttcagtttaccgtggaatgagtattttgaatggtttgcgccgaggtataggttg
gaagtgttggggaataatatggatgatttgaatacgaaggataattcacttgatcgagtg
agggttacggcgttggaacaacttcatgatctgattcatgctccttcggtgcaaatgcat
gatgtgccgagagaaacggttggtcatcatttgggattagtcaaagatgaagaaggatgg
gatgaattggatgaacgtctcgctcgtaagttacaccaatcctcaattcttcatatttta
tttttttctaattattttatatag
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