Agaricus bisporus var. bisporus H97: AGABI2DRAFT212705
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Entry
AGABI2DRAFT212705 CDS
T03140
Symbol
AGABI2DRAFT_212705
Name
(RefSeq) hypothetical protein
KO
K12585
exosome complex exonuclease DIS3/RRP44 [EC:3.1.13.-]
Organism
abv
Agaricus bisporus var. bisporus H97
Pathway
abv03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
abv00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
AGABI2DRAFT212705 (AGABI2DRAFT_212705)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
abv03019
]
AGABI2DRAFT212705 (AGABI2DRAFT_212705)
Messenger RNA biogenesis [BR:
abv03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Exosome cofactors
AGABI2DRAFT212705 (AGABI2DRAFT_212705)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNB
Rrp44_CSD1
Rrp44_S1
OB_Dis3
PIN_4
CSD2
OB_HELZ2
OB_RNB
Ribosomal_L6
Motif
Other DBs
NCBI-GeneID:
18084720
NCBI-ProteinID:
XP_006457346
JGI:
Agabi_varbisH97_2_212705
LinkDB
All DBs
Position
Unknown
AA seq
995 aa
AA seq
DB search
MDQITIKKRPRSEAVITQRKFFKKTARGKVIKVLRERYLRDDVSCGIRGCIACHSSLEHS
LPAAGAPHPSFPNGHFVLPDTNIFLSQMDLMEATLFTPPIILLQTVMEEVRHRSLALYNR
LKALTKTDDKKIWVFYNEYRSETAVIREENETPNDRNDRGIRKTTEWYNSHLQVTRPPIR
GQAPPKIPAVVLLTEDVANRQKAESAGITAFSMKRYVESLPEANQLLDLLAVTDSNGIEP
TRASGVRQPLYPEYLPTATLAAGVKAGELHQGYFNANQYNYLEGSVPVPAFNKPVLLIGR
ENMNRAVSGDIVVVEVFNEKEWKAPADEVVDQDTTLKNDNAEESGDEGEESDGEMAAREK
RLVKFEESARSAERQPTGRVVGIIKRNWRAYVCHIDSTSLTSLNATSLAQQTVFATPVSR
LLPRIRLRTRQAPTLIGQKILVTIDRWDINSRYPEGHFVRSLGKVESKEAEQESLMLEFD
VRYRPFGKAILDCLPPQGEQWVVPPKDDVNPEWKNREDLRQLLICSIDPPGCQDIDDALH
ARPLPNGNIEAGVHIADVSHFVHADTPIDNEAADRGTTVYLVDRRIDMLPSLLGTNLCSL
RPFVERLAFSAIWELTPEAEIVNVRFTKSVIASKAAFTYEEAQIRKDDPNQQDDLSHSIR
LLNTLAKKLKEKRMKAGALNLASPEVKIYLDSSESSDPIDVEQKELRETNSLVEEFMLLA
NISVAEKIQETFPQTAVLRRHLPPPKANFEKLQDILMKRRGIKLDVSSSRALADSLDTCV
DPQEPSFNTLVRIMATRCMLSAEYFCSGSVARDTFGHYGLASAIYTHFTSPIRRYADVLA
HRQLAAAIGNSPLHPSLHSKSHVEHVMDVINRRHRMAQMAGRASVEFYVGLALKGKNERE
AKGGGVKEEAFVIRTFRNGLSVFVSKLGIEGLVMFKKEIKFDAENYTITVPGPSGEVTIA
VFDKVSVNIQVEKDKNTQRGKVKMSLMSPIDSSDL
NT seq
2988 nt
NT seq
+upstream
nt +downstream
nt
atggaccaaatcacgattaaaaaacgtcctcgctcagaggcggtgattacgcagcgcaag
tttttcaaaaagactgcgcgaggaaaggtcatcaaagtacttcgtgaacgctatcttcgt
gatgatgtttcgtgtggaatacggggctgcatcgcgtgccattcttctctggagcactcc
cttcctgccgctggagcacctcacccaagttttcctaatggtcatttcgttctacccgac
acaaacatatttctctctcagatggaccttatggaagcaactctgtttacacctccgatt
atccttctacaaacggtcatggaagaagtccgacaccggtcactcgcactatacaatagg
ctgaaagccctaacaaaaacggacgataagaaaatatgggtgttctataatgaatataga
tctgagactgccgttattcgcgaagagaatgaaaccccgaatgatcggaatgaccgaggg
atcagaaagaccactgagtggtacaacagccatctgcaggtcacccggccgccgattcgt
gggcaggctcctccaaaaattccagcagtcgttcttctgacggaagatgtggcaaacaga
cagaaagccgagagcgccggtataaccgcattctctatgaagagatacgtggaaagcttg
ccggaggccaaccaactcctcgatttactcgccgtgaccgattcgaatgggattgaacct
accagagcgtccggcgtccgacagcctttgtatcctgagtacctacccaccgcgactctt
gctgcaggggtcaaagcaggagaactccaccaaggttacttcaatgcgaaccaatacaat
tatttagaaggcagtgtacctgtacctgcattcaacaagcctgttcttctcattgggcgg
gaaaacatgaatagggccgtcagtggagacattgttgtagttgaggttttcaacgaaaag
gaatggaaagctcctgcggacgaggttgtagaccaagatactactcttaagaatgataat
gcagaagaatccggagacgaaggggaagagtcggatggggagatggctgctcgagaaaag
cgcctcgtcaaatttgaagagtccgctcgatccgccgaaaggcaacccacaggtcgtgtc
gttggaattatcaagcgcaactggcgcgcatatgtctgccatatcgatagtacatctctc
acatccctcaatgcgacttctcttgcccaacaaaccgtatttgcgaccccggtatcacgt
ctacttcctcgcattcggctaagaacgagacaagctccgacgttaatcggtcaaaagatc
ctagtcactatagatcgctgggatatcaattcacgttatcctgaaggtcacttcgttagg
tccctcgggaaggtagagagcaaagaggcagagcaagagagcttgatgctggagtttgac
gtacgctatagaccatttgggaaggcgatccttgattgtttgcctccccaaggtgaacaa
tgggttgttcctccaaaagacgatgtgaatcccgaatggaaaaatagagaggacctaaga
cagcttttaatctgcagcattgaccctcctggttgccaagatattgacgatgctttacat
gctcgccctctacccaatggaaatattgaggctggcgttcatattgcggatgtttcgcat
ttcgtccatgccgacacgcctatagacaatgaagccgctgatcgaggtaccactgtatat
cttgtggataggcgcatagatatgttgccttcgctgctgggtaccaacttatgctctctt
cggccctttgttgagcgtctagcattctcagccatctgggaattaactcccgaagctgag
atcgtcaacgtcaggttcacaaaatctgtcattgcctcaaaagctgccttcacatacgaa
gaagctcagattcgcaaagacgacccaaaccaacaagacgatctcagccatagcattcgc
ctcctcaacactctcgctaaaaagctgaaagaaaaacgtatgaaagccggtgcactcaat
cttgcgtctcccgaagtcaagatctacctcgacagttcagaatcttcagaccctatcgac
gtcgaacaaaaagagctacgagaaaccaacagtcttgttgaagaattcatgctacttgct
aatatcagcgtagctgagaagattcaagaaacgttcccgcagacggctgtcctgagaagg
catttaccgcctccgaaggctaattttgagaaattgcaggatattttgatgaaaaggaga
ggtatcaaattggacgtatcgagttcgcgggcgttggccgattctctggatacatgtgtg
gatccgcaagagccttctttcaatacgcttgtgcgcattatggctacgcgatgtatgcta
tctgcggaatatttctgttcgggtagtgtcgcgagggatacatttgggcattacgggctt
gcgagcgccatctatactcatttcacaagtccaatccggcgatacgcagacgtcctcgct
catcgacaactagcagctgcaataggaaattcaccccttcatccatcacttcactcgaaa
tcgcatgttgaacatgttatggatgttataaaccgacggcatcggatggcacaaatggct
ggccgagcgagcgttgagttctatgttgggttagcgttgaaaggaaagaatgaacgagaa
gcaaagggtggtggagtcaaagaagaggcgtttgtgatacgaacgtttagaaatgggttg
agcgtgtttgtgtcaaaattgggtattgaaggactcgtgatgttcaaaaaagaaatcaag
ttcgacgcggagaattatacgattactgtccccggtccttcgggagaagtcacgattgcg
gtattcgataaagtctcggttaacatccaagtcgagaaggataagaatactcaaagaggc
aaagtcaagatgtcattgatgtcacctattgattctagtgatctgtag
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integrated database retrieval system
