KEGG   Agaricus bisporus var. bisporus H97: AGABI2DRAFT212748
Entry
AGABI2DRAFT212748 CDS       T03140                                 
Symbol
AGABI2DRAFT_212748
Name
(RefSeq) hypothetical protein
  KO
K12625  U6 snRNA-associated Sm-like protein LSm6
Organism
abv  Agaricus bisporus var. bisporus H97
Pathway
abv03018  RNA degradation
abv03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:abv00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    AGABI2DRAFT212748 (AGABI2DRAFT_212748)
  09123 Folding, sorting and degradation
   03018 RNA degradation
    AGABI2DRAFT212748 (AGABI2DRAFT_212748)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:abv03019]
    AGABI2DRAFT212748 (AGABI2DRAFT_212748)
   03041 Spliceosome [BR:abv03041]
    AGABI2DRAFT212748 (AGABI2DRAFT_212748)
Messenger RNA biogenesis [BR:abv03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    P-body specific factors
     AGABI2DRAFT212748 (AGABI2DRAFT_212748)
  mRNA degradation factors
   5'-3' decay
    Lsm complex
     AGABI2DRAFT212748 (AGABI2DRAFT_212748)
Spliceosome [BR:abv03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   LSm proteins
    AGABI2DRAFT212748 (AGABI2DRAFT_212748)
SSDB
Motif
Pfam: LSM SM-ATX
Other DBs
NCBI-GeneID: 18084722
NCBI-ProteinID: XP_006457380
JGI: Agabi_varbisH97_2_212748
LinkDB
Position
Unknown
AA seq 95 aa
MDDFPPQPTEQSPPPPPPNQTGSPTDFLKNVVGKKVIVRLLSGVDYRGILSCLDGYMNIA
LEQTEEHVNGVVTNKYGDAFIRGNNVLYISAAEPL
NT seq 288 nt   +upstreamnt  +downstreamnt
atggacgattttcctcctcagccgacggaacaatctccccctccaccgcctcccaaccaa
actggctctcctacagactttcttaaaaacgttgttggaaaaaaagtaatagtgcggtta
ttatccggggttgactatcgaggtattttgtcctgccttgatggttacatgaacatagcg
ctcgagcaaacagaggagcatgtaaatggcgttgtcacgaataaatacggagatgcgttt
atcagagggaataatgttctgtatatctcggcagcggagccgctgtag

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