Agaricus bisporus var. bisporus H97: AGABI2DRAFT226511
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Entry
AGABI2DRAFT226511 CDS
T03140
Symbol
AGABI2DRAFT_226511
Name
(RefSeq) hypothetical protein
KO
K15172
transcription elongation factor SPT5
Organism
abv
Agaricus bisporus var. bisporus H97
Pathway
abv03250
Viral life cycle - HIV-1
Brite
KEGG Orthology (KO) [BR:
abv00001
]
09120 Genetic Information Processing
09125 Information processing in viruses
03250 Viral life cycle - HIV-1
AGABI2DRAFT226511 (AGABI2DRAFT_226511)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
abv03021
]
AGABI2DRAFT226511 (AGABI2DRAFT_226511)
03019 Messenger RNA biogenesis [BR:
abv03019
]
AGABI2DRAFT226511 (AGABI2DRAFT_226511)
Transcription machinery [BR:
abv03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription elongation factors
AGABI2DRAFT226511 (AGABI2DRAFT_226511)
RNA polymerase I system
AGABI2DRAFT226511 (AGABI2DRAFT_226511)
Messenger RNA biogenesis [BR:
abv03019
]
Eukaryotic type
mRNA processing factors
3' end processing
DRB sensitivity inducing factor (DSIF) complex
AGABI2DRAFT226511 (AGABI2DRAFT_226511)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
KOW4_SPT5
KOWx_SPT5
Spt5-NGN
KOW2_Spt5
Spt5_N
KOW5_SPT5
KOW
KOW1_SPT5
KOW7_SPT5
Motif
Other DBs
NCBI-GeneID:
18085322
NCBI-ProteinID:
XP_006455168
JGI:
Agabi_varbisH97_2_226511
LinkDB
All DBs
Position
Unknown
AA seq
1130 aa
AA seq
DB search
MSDVEDLNSYDPDMQQPREEEEEEEEEEEESFDKPQKQPTRREFEDEEEEEDEEDEEDEE
DEENSGRKRKKAKHRHRRSAASRFLDIEAEVSDDEEDEDEDEDIGADPFIETGEDMDEDA
ARGHHASLDARRQLAEEEQSPEEIAKNLSRRYAHRAAVRYTGDMNEIPQRLLMPSVQDAS
LWQVRVRPGRERDIVFSIMRKALDVEFTAKPLAILSAFQRDSLPGMIYVEARSSKQVSEA
CNGLVGVYLTRIHLVPIEEMASLLQIKKQEQTVTPGSWVRIRRGKYAGDLAQVMDITDTG
EDVGLKFIPRIDLNPRDDAALDGKKRKKMTGSGANMRPPQRLFNYEEVAKVYGRKSVTRR
SDVYVFQNDTYRDGFIEKDFKVSALILEDVNPTLDEITQFTRRQDGEGENPVDLSIIAEA
SRKAAVLVLQPGDHVEVFEGEQAGIHGVVEEINQDVVTISAIGFDVEGQKIEIPARSVRK
RFKPGDHVKVMTGQNADETGLVVSIADNIVTFLSDMSMQEVSVFSKDLREAAEVGSGTNI
VGNYELHDLVQLDAQTVGVIFKTERDSFRVLDQNGQVRLVQPHQISMRRDSNRAVATDRD
GHEIRINDNMKEVEGEGRKGRVLHIYQSFYAFLHNRDIIENGGVFVTRTRALLSVAPKGS
LVKPGADLSKMNPALVQPTGGMVGSGNMGRGPKDRHIGVTVTVVKGPHKGYAGTIKDTNG
NIARVELRTGNKLIMIDKEKLYRRLPDGKLEPLDRPGGGRGGGFGPGGGGRMGPPYNAGG
FGGNAAGGRTPFGNSGRTPNPYTSTEGRTPGWNASRTPNPYVDGGKTPAWNASSRTPNPY
ADGGKTPAWNASSRTPNPYSSGGGASSWGGATPGGNVAPAGGPSWGGATPGRATTGWGTS
DGWASPRNTSWTATDTTPWSAPTPASAPTPASAPTPTTAATPAFNSGPTPAPMHTPAPPL
AHTPANYWTGQSAPTPFTSFTYGTSPSSSEYTLDEDWMFESIASTYLNRIKVIIRDTKID
NYKDGILENRVGFILSAHRTQGGYEQEVVVAFDDLSGEKETLAAKYVKPIEASRTNEEAL
AMEGPSEVKGRAVLLRANADSAMVEVSPKGDSSVFEVPKTALLALYEQRS
NT seq
3393 nt
NT seq
+upstream
nt +downstream
nt
atgtcggacgtcgaagaccttaattcgtacgaccctgatatgcaacaaccccgagaggag
gaggaggaggaagaagaggaagaggaagagtccttcgataagccgcagaaacaaccgacg
cggcgggaatttgaagatgaggaagaggaagaggacgaggaggatgaagaagacgaggaa
gacgaagaaaactctggaaggaaacgcaagaaagccaagcaccgtcatcgacgttcggct
gctagtcgtttcctagatattgaagccgaggtcagcgacgatgaagaagacgaagacgaa
gatgaagacataggtgcagatcctttcattgagacgggagaggatatggatgaagatgcg
gcaagaggccatcatgcttcactagatgcaaggcgacaacttgctgaagaagaacaaagc
ccggaagagattgcaaaaaatctaagtagacgatatgcccatcgcgccgccgttcgatat
acgggtgacatgaatgaaatcccgcaaagattgctcatgccttcagtgcaagatgcaagt
ttatggcaagttcgagtcaggcctggacgcgagcgcgatattgtgtttagtatcatgcgc
aaagcgctcgatgtcgagtttaccgcaaaacctctcgctatcctttctgctttccaaaga
gactcgcttcccggtatgatatacgtggaagcacgcagctcaaaacaagtttccgaagct
tgtaatggtctcgttggtgtctacctcactcgtatacatcttgtgcccattgaagaaatg
gccagccttttgcaaatcaaaaaacaagagcagaccgtgacaccgggtagctgggtgcgc
atccgtcgaggaaaatatgccggagatttggcgcaagttatggatatcaccgatactggc
gaagatgtcggattgaagttcattccccgtattgatctcaatccaagagatgatgctgct
ttggacgggaagaagcggaaaaaaatgactggctcaggcgccaacatgcgtccgccacaa
cgactgtttaattatgaggaggtcgcaaaggtgtatggccgcaagtctgtgactcgtcgg
agcgatgtctacgtatttcaaaacgacacctaccgtgatgggttcatcgaaaaggatttc
aaagtcagcgctttgattctggaggatgtgaatccgactttggatgaaatcacacaattc
actagacggcaggacggggaaggcgagaacccggtagatctttcgattatcgctgaggct
tcacgcaaagctgctgtattggttttacaacctggtgatcatgtagaagtgtttgagggt
gaacaggccggtatccatggtgtagtggaagagatcaaccaggatgtggtgacgatttct
gcgattggatttgacgtggagggtcagaagatcgaaattcctgccaggagtgtgaggaag
aggttcaaacctggtgaccatgtcaaggtcatgactggccagaatgccgatgaaacgggt
ttggtggtttcaattgcggataacatcgtaacgtttttgtcggacatgtcgatgcaagag
gtctctgtgttctctaaggatcttcgtgaagctgccgaggttggctcaggtactaacatt
gttggaaactacgagctgcacgacttggttcaacttgacgcgcaaactgttggtgtcatt
ttcaagactgaacgcgattctttccgtgttctagaccaaaacggccaggtgcgtttggta
caaccccaccaaatctctatgcgccgggattcaaaccgagcggtggcgacggatcgcgat
ggacacgagatacgcatcaatgacaacatgaaggaagttgagggagagggacgcaagggc
cgtgttctacacatctaccaatccttctacgctttcctccataaccgcgatatcattgaa
aatggcggtgtttttgtgacaaggacacgagccttgctctccgtggcaccgaaaggtagt
ctcgtcaaacccggtgcagatctttcgaagatgaacccagcactcgttcaacccactggt
ggcatggtaggctcaggcaatatgggtcggggacccaaagacaggcatattggagtgaca
gtcaccgtagtcaagggacctcataagggatatgcgggtactatcaaagatacgaacggc
aacattgctcgggttgagctacggacggggaacaagcttatcatgatcgacaaagagaag
ctttaccgcaggctgcccgatggcaagcttgaacccctcgatagaccaggaggcggacgt
ggcggtggatttggtcctggtggaggaggtcgtatggggcccccatacaacgctggtggg
tttggtggcaatgctgcaggtggccgtacgcccttcggcaactcgggacgtacaccaaac
ccttatacatccaccgaaggccggacacccggatggaacgcctcaagaacgccaaatcca
tatgttgatggaggaaagacgcctgcgtggaatgcaagttcgcggacgcctaatccttat
gctgatggtggtaaaacaccagcatggaacgccagctctaggacaccaaatccatatagc
agtggaggtggtgcttccagttggggcggtgcgactcctggagggaatgtcgcacctgcc
gggggtccgtcatggggtggtgccacgcctggaagagcgaccacagggtggggtacgagt
gacggatgggcgtcaccgaggaatactagttggacagcgactgacacgacgccttggagt
gcacctactccagcttctgcacccacaccagcttctgcaccaacacccacaacagcggct
acgccagcgttcaatagtggacctacaccagcacccatgcatactcctgctcctccactt
gcccatacacctgctaactattggactggacaatcggctcccacaccattcacaagcttc
acttatggaacaagtcccagctcatccgagtacacactggatgaagattggatgttcgaa
tctatagcctcgacctatctcaaccgcatcaaggttataatccgggataccaagatcgac
aactacaaagacggtatccttgaaaatcgagtgggttttattctttcagcgcatcggact
caaggcgggtatgaacaagaggttgtggttgcatttgatgacctgtctggagaaaaagag
acattagcggccaagtatgtcaaaccgattgaggcatcgagaacgaatgaagaggcgttg
gcgatggaaggtcctagtgaggtgaaaggacgtgctgtgttattacgcgccaatgcggat
tctgctatggtggaagtgtcgccgaaaggtgattcgagtgtattcgaggttcctaagacg
gctctgttggctttgtatgagcagagaagttag
DBGET
integrated database retrieval system
