Agaricus bisporus var. bisporus H97: AGABI2DRAFT77358
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Entry
AGABI2DRAFT77358 CDS
T03140
Symbol
AGABI2DRAFT_77358
Name
(RefSeq) hypothetical protein
KO
K12598
ATP-dependent RNA helicase DOB1 [EC:
5.6.2.6
]
Organism
abv
Agaricus bisporus var. bisporus H97
Pathway
abv03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
abv00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
AGABI2DRAFT77358 (AGABI2DRAFT_77358)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
abv03019
]
AGABI2DRAFT77358 (AGABI2DRAFT_77358)
03041 Spliceosome [BR:
abv03041
]
AGABI2DRAFT77358 (AGABI2DRAFT_77358)
03009 Ribosome biogenesis [BR:
abv03009
]
AGABI2DRAFT77358 (AGABI2DRAFT_77358)
03016 Transfer RNA biogenesis [BR:
abv03016
]
AGABI2DRAFT77358 (AGABI2DRAFT_77358)
Enzymes [BR:
abv01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
AGABI2DRAFT77358 (AGABI2DRAFT_77358)
Messenger RNA biogenesis [BR:
abv03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
TRAMP complex
AGABI2DRAFT77358 (AGABI2DRAFT_77358)
Spliceosome [BR:
abv03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
AGABI2DRAFT77358 (AGABI2DRAFT_77358)
Complex C
U4/U6.U5 tri-SnRNP related factors
AGABI2DRAFT77358 (AGABI2DRAFT_77358)
Ribosome biogenesis [BR:
abv03009
]
Eukaryotic type
Pre-60S particles
Helicases
AGABI2DRAFT77358 (AGABI2DRAFT_77358)
Transfer RNA biogenesis [BR:
abv03016
]
Eukaryotic type
tRNA degradation factors
TRAMP complex
AGABI2DRAFT77358 (AGABI2DRAFT_77358)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
MTR4_beta-barrel
DSHCT
DEAD
MTR4-like_stalk
Helicase_C
DEXQc_Suv3
ResIII
AAA_22
PilO_N
nSTAND3
Motif
Other DBs
NCBI-GeneID:
18086654
NCBI-ProteinID:
XP_006456274
JGI:
Agabi_varbisH97_2_77358
LinkDB
All DBs
Position
Unknown
AA seq
1001 aa
AA seq
DB search
MGSPKPIVLDDFETEAKREIAASAGLTGATTEAGSRLELRHQVRHQVAVPPGYNYTPIAK
HVPPAKPDREYEFELDPFQRVSVYAIQRNESVLVSAHTSAGKTVVAEYAIAQCLNRKQRV
IYTSPIKALSNQKYRDMLKEFGDVGLMTGDVTINPSATCLVMTTEILRSMLYRGSEIMRE
VAWVIFDEIHYMRDKERGVVWEETIILLPHTVRYVFLSATIPNAMQFAEWICNSHEQPCH
VVYTDFRPTPLQHYLFPAGGEGIFLVVNEKGEFREDNFTKAMGKLQESAGDDPADPKAGK
GRKGKSRKGGPDKRGSSDISKIVKMIMVKNYNPVIVFSFSKRECEGLAVNMSKFEFNNEE
EQTLVADIFNNAIANLAEVDRQLPQIANILPLLRRGVGVHHGGLLPILKEVIEILFQEGL
IKVLFATETFSIGLNMPAKTVVFTAARKFDGREIRNLSSGEYIQMSGRAGRRGLDDRGVV
IMMVDEKLEPVAAKAMVKGEADRLDSAFHLGYNMILNLMKVEGISPEYMLERCFFQFQSS
AGIPKLAEELKHEEESKNSTVITDEERVAEYYEYRQQLDQLNADFREVITHPTYSLPFLL
PGRLVKVKYQKSEFGWGIVINFQKRLPPKNRPVPESDLPPHEQYIVDVLLNCAKGSTATQ
GHNTLAIQSTGIEPCPPGQKGQPIIVPVLLSTIESISSLRLFVPKDLRQESAREHLWKSV
LEVQGRFPNGLTLLDPVQHMGIQDQKFKDLVKKISILENKMFSSPLHDSPQLPHLYTLYS
NKRARQDKIRDLKKRIQATHDVLQLEELKCRKRVLRRLNFTNSADIVDMKGRVACEISSG
DELLLTELIFNGVFNSLQPEHCAGLLSCFVFAEKSEKQTNLKEELAAPLRVMQEFARRIA
KVSKESKVSIDENEYVSSFKVELMDAVVHWCRGSSFTDILKMTDQFEGSIIRVFRRLGEL
LRQMAQAAKVIGNEELKEKFEKASEMLERPNSVIFCSSLYL
NT seq
3006 nt
NT seq
+upstream
nt +downstream
nt
atgggctccccgaaacctatcgtactggatgactttgaaacagaagctaaacgcgagata
gccgcaagtgccggcttgactggagctacgaccgaggcgggatcacgtctagaactacgg
catcaggttcggcatcaagttgcggtgcctccgggatacaattacactccaatagcaaag
catgtaccccccgccaaacccgaccgcgaatacgaattcgagctcgatccgttccagaga
gtgtcggtatatgctattcaacgaaacgagagcgtcttggtgtcggcacataccagtgca
ggaaagacagtcgtagctgaatacgctattgcccaatgtcttaatagaaaacagagagtc
atttatacaagtcctatcaaggcactaagtaatcagaaatatcgtgatatgctcaaggaa
tttggggacgtcgggctcatgactggagatgtgacaatcaatccttctgcaacatgttta
gtgatgacgactgagattctacgttcgatgctttaccgcggctcggagatcatgcgcgaa
gtcgcatgggtcattttcgacgagattcactacatgcgggacaaggagcgaggtgtggtt
tgggaggaaacaatcattctcctcccacacacggttcgctatgttttcctttctgcgaca
ataccgaacgcgatgcagtttgcggagtggatatgcaattctcacgaacagccgtgccac
gtcgtctacaccgacttccgtcctacacctctacagcactatctattccctgccggtgga
gagggtatctttctcgtcgttaacgagaagggcgagtttcgagaagataatttcaccaag
gcgatgggcaagctgcaggagagtgcgggggatgatcctgcggacccaaaggcgggtaaa
ggtaggaaaggtaaatcaagaaaaggaggaccagataaaagaggttcttctgatatctca
aaaattgtcaaaatgatcatggtcaagaattacaaccccgttatcgtcttctcctttagt
aaacgagagtgcgagggtctcgccgtaaacatgtccaagtttgaattcaataacgaagaa
gaacagacccttgttgccgatatcttcaataacgctatcgcgaatttagccgaagttgat
cgccaactacctcaaatagccaacatcctccctcttctccgccgtggtgtcggcgtgcac
catggtggattactccccattctaaaagaagtaattgaaattctcttccaagaaggtctt
atcaaggtgctctttgcaacggagacgttctccattggattgaacatgcctgcaaagaca
gtcgtattcactgccgcccgcaaatttgatggtcgtgaaatacgtaatctgtcttcagga
gaatatattcagatgtctgggcgcgctggtcgacgtggtttggacgatcgcggagtggtg
attatgatggttgatgagaaactagagccggttgctgcaaaagctatggtgaaaggagag
gcggatcggttggactcggcattccatctggggtacaatatgattctgaatttgatgaag
gtggaaggtatcagtccagagtatatgctcgagagatgtttcttccagttccagagtagt
gctgggatacccaagcttgcagaagaactaaagcacgaagaagaatccaagaactctacg
gtgataactgatgaagagcgcgtagctgagtattatgaatatcgtcaacaacttgaccag
ctgaacgccgattttcgagaggtcatcacccatccaacatattctctacctttccttctt
ccgggccgcctcgtcaaggtcaaatatcagaaatcagagttcggctggggtatcgtcatc
aatttccaaaagcggttgccacctaagaaccgacccgttcctgaatcggacctgccacca
cacgagcaatatatcgtagatgtcctccttaactgtgcgaaaggcagtactgctacgcaa
ggtcacaacaccctggccatccaatccaccggtatcgagccttgtcctcccggacagaaa
ggccagccaataattgtgccagtcttactatccacgattgaatccataagctctctccga
ttgtttgtccccaaggatttaaggcaagagtccgcaagggaacacctttggaaaagtgta
ctggaggtgcagggacggttccctaatgggctaactctcttggacccagttcaacatatg
ggtattcaagaccaaaaattcaaagacttggttaaaaaaatatcgatactggaaaataag
atgttctctagtcctttacatgactcacctcaactaccgcacctttatacactctattcc
aacaaacgggcgcgccaagataagattcgggacctcaaaaagcgaattcaagcgacacat
gatgtactgcaactagaggaactgaaatgccggaagcgcgttcttcgtcggttaaatttc
acgaattcagctgatatcgtcgacatgaagggtcgtgtagcatgcgagattagttcggga
gatgaactactattgaccgagttgattttcaacggagtcttcaactcgctacagccggag
cattgtgcgggcctactgagttgtttcgtatttgcggagaagagtgagaagcagactaac
ctcaaagaagaacttgctgcgcctctacgcgtgatgcaagagttcgcgcgtcggatagct
aaggtatcaaaagagtcgaaggtttctatcgacgagaacgaatatgtatcttcgtttaaa
gtggaactcatggacgctgttgtccattggtgtcgaggttcttcattcaccgatattttg
aagatgacggatcaattcgaaggcagtattattcgagtgttccgacgtttaggcgaacta
ctacgtcagatggctcaagctgctaaagtcattggaaacgaagagctcaaagaaaagttt
gagaaggcatcggagatgctcgagaggccgaactcggtcatcttttgctcatcactctac
ctataa
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