Agaricus bisporus var. bisporus H97: AGABI2DRAFT79146
Help
Entry
AGABI2DRAFT79146 CDS
T03140
Symbol
AGABI2DRAFT_79146
Name
(RefSeq) hypothetical protein
KO
K12820
pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15/PRP43 [EC:
5.6.2.6
]
Organism
abv
Agaricus bisporus var. bisporus H97
Pathway
abv03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
abv00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
AGABI2DRAFT79146 (AGABI2DRAFT_79146)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
abv03041
]
AGABI2DRAFT79146 (AGABI2DRAFT_79146)
03009 Ribosome biogenesis [BR:
abv03009
]
AGABI2DRAFT79146 (AGABI2DRAFT_79146)
Enzymes [BR:
abv01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
AGABI2DRAFT79146 (AGABI2DRAFT_79146)
Spliceosome [BR:
abv03041
]
Complex A
U2 snRNP components
U2 related factors
AGABI2DRAFT79146 (AGABI2DRAFT_79146)
Complex B
AGABI2DRAFT79146 (AGABI2DRAFT_79146)
Complex C
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-SnRNP related factors
AGABI2DRAFT79146 (AGABI2DRAFT_79146)
Ribosome biogenesis [BR:
abv03009
]
Eukaryotic type
90S particles
Helicases
AGABI2DRAFT79146 (AGABI2DRAFT_79146)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
DEAD
Helicase_C
HA2_N
AAA_22
AAA_19
SRP54
nSTAND3
Flavi_DEAD
ABC_tran
T2SSE
AAA_30
PhoH
AAA_7
Motif
Other DBs
NCBI-GeneID:
18086730
NCBI-ProteinID:
XP_006457150
JGI:
Agabi_varbisH97_2_79146
LinkDB
All DBs
Position
Unknown
AA seq
751 aa
AA seq
DB search
MSSKTDPAAAEPLYGFMPRHVKGKQVRKALDHNLNPFTKKPHTTQYKTILETRKKLPVYG
QMEEFLEIFNKNQIMVMVGETGSGKTTQIPQFVAFSDLPHTRGKMVACTQPRRVAAMSVA
KRVADEMDVELGRQVGYSIRFEDMTEPGTTFLKYMTDGMLLREAMNDNTLARYSTIILDE
AHERTLATDILMGLLKDLAKRRTDLKIIVMSATLDAVKFQKYFSIRSDSEAPLFKVPGRT
HPVEVFYTQEPEKDYVEAAIRTVLMIHRAEEPGDILLFLTGEEEIEDACRKIKIEADDLT
NQDPDSVGPLVCIPLYSSLPPQQQQRIFDPAPRPSKADGPAGRKVVVSTNIAETSLTIDG
IVYVVDPGFSKQKVYNPRIRVESLLVSPISKASAQQRAGRAGRTRPGKCFRLYTENDFIK
ELEEQTYPEILRSNLANTVLELVNLGIKDLVHFDYVDAPAPETLMRALELLNFLAAMDDE
GNLTALGKLMADFPLDPQLSKLLIASPDFNCSNEILTITAMLSVPNVWLRPNNQRREADA
AKETFTVPESDHLTLLNVFNQYMLNKHDRNWAWSNYVSARALAQAENVRQQLQRIMERLD
IDLVTTNDEVKLFTNVRKALVCGFFMQVAHKEGEKGSYFTVKDNQLVGLHPSCGLKTQPE
WVIFNEFVLTTRPYIRTVTEVRPEWLFENARLYFDLESFPDGETKRALKRVHAKKYGLVE
SRNGSRKGTPVGEPAPKRRKTQAITQPNSKK
NT seq
2256 nt
NT seq
+upstream
nt +downstream
nt
atgtcgagcaagacagacccggccgctgcagagcctctgtacggcttcatgccccgccat
gtcaagggcaaacaagtcagaaaagccctcgatcataatctcaacccctttacgaaaaaa
ccacatactacccagtacaaaaccattctcgagacgcgcaaaaaactccctgtatatgga
caaatggaagagtttctggaaatattcaataaaaatcaaatcatggtcatggttggtgag
acgggatctggcaaaacaacccagatacctcaatttgttgccttttctgacctaccgcat
acaaggggcaagatggtagcctgcacgcagcctcgacgtgtcgcagccatgtccgtagcc
aagcgcgtggccgacgagatggatgtcgagctgggtcgtcaagtcggttattcgattcgt
ttcgaggatatgacagaaccgggcactactttcctcaagtatatgaccgacggtatgctt
ctccgtgaagccatgaacgacaacactcttgcacgatactctaccattattcttgacgag
gctcatgagcgcactctcgccaccgacatcctcatgggccttctcaaggacctcgctaaa
cgccgaaccgaccttaaaatcatcgtcatgtctgcaactctcgatgcagtcaaatttcaa
aagtactttagtatccgatccgactctgaagctcctctgttcaaggttcctggacgtacc
caccctgtcgaagtcttctatacacaagaacctgaaaaagactatgtcgaagctgctatt
cggacggtgttaatgattcatcgcgccgaggagccaggagacattctcttgttcctgact
ggagaagaggagattgaagacgcatgtcgcaaaattaaaatagaagcggatgatctcacc
aatcaggatcctgactctgttggtccccttgtgtgtataccgctctactcctcccttccc
ccacaacagcagcagcgtatattcgatcctgcgcctcgaccttccaaagctgatggaccg
gccggccgtaaagtcgtcgtgtcaaccaacattgccgagacatcccttaccattgacggg
atcgtgtatgttgttgaccccggattttcgaaacaaaaggtgtataacccgcgtatccgt
gttgagagcttgttggttagtccaatctcgaaggcttcggctcagcaacgcgctggtcgt
gctggtcgaacgaggcccggaaaatgcttccgtttatataccgagaacgactttatcaag
gagctggaggaacagacgtatccagagattttgcgcagtaatctggcaaacacagtactt
gaacttgttaacctgggtattaaggaccttgttcattttgactacgtggacgcccctgct
ccagagacattaatgcgtgctcttgagctcctcaactttttggctgctatggacgatgag
gggaacttgacggcgctcggaaagctcatggctgacttccccctggaccctcagctctca
aaacttttgattgctagcccagatttcaattgcagcaatgaaatattgaccatcaccgct
atgctgtcggttcccaatgtctggctacgaccgaacaatcagcgacgggaagctgacgcc
gcgaaggaaacgttcactgtcccagaaagcgatcacctcacgctcctcaacgtctttaat
caatacatgctgaataagcatgataggaactgggcttggagcaactatgtttctgcacgc
gctcttgcacaagcggagaatgtgcgtcagcaacttcagcggattatggaacgactcgac
attgatctcgtgacaacgaatgacgaggtcaagttattcacgaacgtccgaaaggcgctt
gtgtgcggattcttcatgcaggttgcccataaggaaggagaaaaaggaagctatttcacg
gttaaagataatcagcttgttggactccacccgtcgtgtggcttgaagacacaacctgag
tgggtgatcttcaacgagtttgtgttgacgacacgtccgtatatccgcactgtgaccgaa
gttaggcccgaatggctgtttgaaaatgcacggctatactttgatcttgagtcgttccct
gatggtgaaacgaaacgggcgcttaagcgggtacacgcaaagaaatatgggttggtggag
agcaggaacgggagccggaaggggacgcctgtgggtgagccggcaccgaagcggagaaag
acgcaggctatcacccaacccaatagtaagaagtaa
DBGET
integrated database retrieval system
