Acidobacterium capsulatum: ACP_0621
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Entry
ACP_0621 CDS
T00868
Symbol
rpoN
Name
(GenBank) RNA polymerase sigma-54 factor
KO
K03092
RNA polymerase sigma-54 factor
Organism
aca
Acidobacterium capsulatum
Pathway
aca02020
Two-component system
aca02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
aca00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
ACP_0621 (rpoN)
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
ACP_0621 (rpoN)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
aca03021
]
ACP_0621 (rpoN)
Transcription machinery [BR:
aca03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
ACP_0621 (rpoN)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma54_DBD
Sigma54_CBD
Sigma54_AID
SQS_PSY
LacI
HTH_3
HTH_IclR
Fe_dep_repress
HTH_23
HTH_38
Arg_repressor
HTH_Tnp_ISL3
Motif
Other DBs
NCBI-ProteinID:
ACO33800
UniProt:
C1F1M0
LinkDB
All DBs
Position
complement(709050..710723)
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AA seq
557 aa
AA seq
DB search
MALLQPKLNLKVAQRQILTPGLMQMVSVLALNKLELKEMIQAEIAENPVLEEMEESVPLL
DDVARREEDHDRGLEIKASSEESEKKDPFDEIDFGSYFQDYLDPGFRTPNSFELTEKPSI
ENFLSAPSTLSDHLLWQLGALTLTPAIRDAAEYLIGNLNEDGYLPADEEDLLEGYLREQL
APEGAESVNGHAPSALTALPPAMAERARAHLASALEVVRQLDPIGIATRDLRECLMVQVA
AQRREFDLIYQRTAVVSAFDEQAEDSAPAESTAQPESSAPGDPERLQRISVFETAAAILD
RHMLLLQKRDPRELSKAVARSVEETQRAIDFIRTLDPRPGQRYNRSEARLIEPDVAFVKR
DDEYVVVMNDEDLPSLRLNHGYRRLLNKDGAEKDVKDYVKERYRSALQLMRNIEQRKNTI
LKTCESIIRRQTDFLENGIEAMKPMMIKEVAEEIGVHPSTVSRAVSNKYVHTPQGVYELR
FFFSEGVNGPEGSGTPLMLLKRKVKKLIEDEDPSKPLTDDQIAQMLQSQGIEVTRRTVAK
YREDMKIPSTHQRRVRI
NT seq
1674 nt
NT seq
+upstream
nt +downstream
nt
atggcacttctacaacccaagctcaatctgaaagtcgcccagcgccagatactcacgccc
gggctgatgcagatggtcagcgtcctcgcgctgaataagcttgagttgaaagagatgatc
caggccgagatcgccgaaaatcccgttctcgaagagatggaagagagcgtaccgctgctc
gacgacgtcgcgcggcgcgaagaggaccacgaccgcggcctcgaaatcaaagcctcgtca
gaggaatccgaaaaaaaggatcccttcgacgaaatcgacttcggttcctactttcaggac
tatcttgatcccggcttccgcacgcccaacagcttcgagctgactgagaagccctccatc
gaaaatttcctctccgcgcccagcaccctcagcgaccatctgttgtggcagctcggagcg
ctcacgctcacccccgccatccgcgatgcggctgaatatctcatcggcaatctgaatgaa
gacggctatctgcctgccgacgaagaagatctgctcgaaggctacctgcgcgagcagctt
gcgcctgagggcgccgagtccgtcaacgggcatgctccttcggccttgactgccttgccg
cccgctatggccgagcgcgcgcgtgcccatctggcatccgctcttgaagtcgtgcgccag
cttgaccccatcggcatcgccacgcgcgatctgcgcgagtgcctgatggtacaggttgcg
gcgcagcgccgcgagttcgacctgatctatcagcgcaccgccgtcgtttctgctttcgat
gaacaggccgaagactccgctcccgccgagtccactgcgcagccggagtcttccgcgccc
ggcgatcccgagcgtctgcagcgcatctcggtctttgagactgccgcggctattcttgat
cgtcatatgctgcttttgcagaagcgtgacccgcgagagctgtccaaagccgtcgcgcgt
tcggtcgaggaaacccagcgcgccatcgacttcattcgcacccttgatccgcgccccggc
cagcgctacaaccgcagcgaggcgcggctcatcgagcccgacgtcgcctttgtcaagcgc
gatgacgaatacgtcgtcgtcatgaacgatgaagatctgccctcactgcgtctcaatcat
ggctatcgccgcctgcttaacaaagacggcgcggaaaaagacgtgaaggattatgtcaag
gagcgctatcgctcggccctgcagttgatgcgtaacattgagcagcgcaaaaataccatc
ctcaaaacctgcgaatccatcatccgccggcaaacggatttcctcgaaaacggcatcgaa
gctatgaagccgatgatgatcaaggaagtcgcggaagaaattggcgtgcatccctccacc
gtaagccgcgcggtgtcgaacaaatacgtgcatacgccgcagggcgtctatgagctgcgc
ttctttttctccgaaggcgtcaacgggcctgaaggctccggcacgccgctcatgctgctc
aagcgcaaagtcaaaaagctcattgaagacgaagaccccagcaagccgctcaccgacgat
cagattgcccagatgctgcagtcgcagggtatcgaggtcacgcggcgcaccgtggccaag
tatcgcgaagacatgaagattcccagcacgcaccagaggcgcgtgcgcatctga
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