Acidobacterium capsulatum: ACP_2350
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Entry
ACP_2350 CDS
T00868
Name
(GenBank) ATP-dependent RNA helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
aca
Acidobacterium capsulatum
Pathway
aca03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
aca00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
ACP_2350
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
aca03019
]
ACP_2350
Enzymes [BR:
aca01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
ACP_2350
Messenger RNA biogenesis [BR:
aca03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
ACP_2350
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
Helicase_C_2
Cas3-like_C_2
SWI2_SNF2
AAA_22
Utp25_C
Motif
Other DBs
NCBI-ProteinID:
ACO33748
UniProt:
C1FAF2
LinkDB
All DBs
Position
2728638..2729930
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AA seq
430 aa
AA seq
DB search
MQFSELNLSSHLKNQLAVNQFVTPTPVQEAAIPPAMEGKDVLATAQTGTGKTLGFLLPAM
ERLLATKGKHPAVLILTPTRELALQVEKQYAQLAGKSLPQAATLIGGASENNQIRDLKAG
ARLIVATPGRLEDFLERRLIDLKRIEVLVLDEADRMLDMGFIPAIRRIVAKLPRQRQTMC
FSATIDPAVAHLLDEILTNPVRLSFGSTQQTSSSVRLIAYEVDADQKAALVHRVVTAEEG
QSLVFVGTKRRTEHVAKRLDRAGISVAVLHGDRSQSQRNRALEDFQRGRARVLVATDVAS
RGIHVDNIAQVINYDMPKMTEDFIHRAGRTGRAGATGVAATFYTPLERREFNRFEKTLNR
KIERVMIASDSGLDREERGQMVNHAPVLRMATVAPTKPRGKGKGKSKAPAAAAPQQRVYL
EGERLQRYAN
NT seq
1293 nt
NT seq
+upstream
nt +downstream
nt
atgcaattttctgaactgaacctatcctcccacctgaagaatcagcttgcagttaaccag
tttgtaaccccaacccctgtccaggaagccgcgattccgccggccatggaaggcaaggac
gtactggcgaccgcgcagaccggcaccggcaagaccctcgggtttctgctgcctgccatg
gagcgcctgctggccaccaagggcaagcatccggccgtcctcattctgacgccaacccgc
gaactggccctgcaggtggaaaagcaatacgcccaactggccggcaagagcctgccgcag
gccgcgacgctgatcggcggcgcgagcgagaataaccagattcgcgacctcaaggccggt
gcgcgtctcatcgtcgccaccccgggccgtctggaagactttctggagcgccgcctcatc
gacctcaagcgcattgaagttctggtgctcgacgaggccgatcgcatgctcgacatgggc
ttcattccggcgattcgccgcattgtggccaagctgccccggcagcgccagaccatgtgc
ttctcggcgactattgatccggctgtcgcgcacctgctggatgaaattctgaccaatccc
gtgcgcttgtccttcggctcgacccagcagacgtccagcagcgttcgcctgattgcctat
gaagtcgatgccgatcagaaggctgcgctcgtccatcgtgtggtcaccgccgaagaaggc
caatcgctcgtcttcgtcggaaccaagcggcgcaccgagcatgtggccaagcggctcgat
cgcgcgggcatctccgtggcggtgctgcacggcgaccgctcgcagtcgcagcgcaatcgc
gcactcgaagactttcagcgtgggcgtgcccgtgtgctggtcgccaccgatgtcgcctcg
cgcggcattcacgtggacaacatcgcgcaggtcatcaactatgacatgccgaaaatgacc
gaggacttcatccatcgcgccggccgtaccggacgcgcgggagcgaccggagtcgcggct
accttctacacgccgctcgagcgccgcgagttcaatcgctttgaaaagacgctgaatcgc
aagattgagcgcgtcatgatcgcgagcgacagcggccttgatcgcgaggagcgcggccag
atggtcaatcatgctcctgtgctgcgcatggccacggtggcccccaccaagccgcgcggc
aaggggaagggtaagagcaaagcgcccgctgcggctgcgcctcagcagcgcgtttacctt
gagggcgaacgcctgcagcgctacgcgaattag
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