Amycolatopsis carbonis: QRX50_10845
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Entry
QRX50_10845 CDS
T10496
Name
(GenBank) RtcB family protein
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
acab Amycolatopsis carbonis
Brite
KEGG Orthology (KO) [BR:
acab00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
acab03016
]
QRX50_10845
Enzymes [BR:
acab01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
QRX50_10845
Transfer RNA biogenesis [BR:
acab03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
QRX50_10845
Prokaryotic type
tRNA splicing ligases
QRX50_10845
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
Motif
Other DBs
NCBI-ProteinID:
WIX81216
UniProt:
A0A9Y2ILI6
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All DBs
Position
2220568..2221758
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AA seq
396 aa
AA seq
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MYTAVDGARVPIRMWADPTSVEEQAMRQLHNVANLPWVHGVAVMPDVHYGKGATVGSVIA
MRDAASPAAVGVDIGCGMSAVRTSLTAADLPDDLARLRRRIESAVPVGFGLRKTPVNPAK
VHGVGGWDAFWKSFGDLHEGVQGLHDRAARQVGSLGGGNHFIEVCLEQGGADEGRVWLML
HSGSRNIGKELAERHMAVARKLPHNADLPDRDLAVFVAGTPEMAAYRRDLFWAQDYAARN
RATMVALVKLAVAEVVPGTTFDDSISCHHNYVAEETYDGVDLLVTRKGAIRAGAGDLGII
PGSMGTGSYIVRGLGNTASFESASHGAGRRMSRTKARKTFTAADLAAQTDGVECRKDSGV
VDEIPAAYKDIDAVLEAQTDLVEVVAHLKQVVCVKG
NT seq
1191 nt
NT seq
+upstream
nt +downstream
nt
atgtacacggcggtagacggtgctcgcgtcccgatccggatgtgggccgaccccacgtcg
gtcgaggaacaggccatgcgccagctgcacaacgtcgccaatctgccttgggtgcacggc
gtcgcggtgatgccggacgtccactacggcaagggcgccaccgtgggcagcgtgatcgcc
atgcgtgacgcggcgtcgccggcggcggtgggtgtcgacatcgggtgcgggatgagcgcg
gtgcgcacgtcgctgaccgcggcggacctgcccgacgacctcgcccggctgcggcgccgg
atcgagtcggccgtgccggtggggttcgggctgcgcaagacgcccgtgaaccccgcgaag
gtccacggcgtgggcggctgggacgcgttctggaagtcgttcggcgacctccacgagggc
gtgcagggcctgcacgaccgcgcggcgcgccaggtcggcagcctcggcggcgggaaccac
ttcatcgaggtctgcctggaacagggcggcgccgacgagggccgcgtgtggctgatgctg
cattcgggttcgcgcaacatcggcaaggagctcgccgagcggcacatggccgtcgcgcgc
aagctgccgcacaacgccgacctgcccgaccgcgacctcgccgtgttcgtcgcgggcacg
cccgagatggcggcctaccggcgggacctgttctgggcgcaggactacgcggcgcgcaac
cgcgccacgatggtggcgctggtcaagctcgccgtcgccgaggtggtcccggggaccacg
ttcgacgactcgatctcttgtcaccacaactacgtcgccgaggagacctacgacggcgtc
gatctgctcgtgacccgcaagggcgcgatccgggccggcgcgggtgacctcgggatcatc
ccgggcagcatgggcaccggctcgtacatcgtgcgcgggctcggcaacacggcgtcgttc
gagtcggcttcgcacggcgcggggcggcggatgtcgcggacgaaggcacgcaagaccttc
accgcggccgacctcgcggcccagaccgacggcgtcgagtgccgcaaggacagcggcgtg
gtcgacgagatcccggcggcctacaaggacatcgacgcggtgctcgaggcgcagaccgac
ctcgtcgaggtcgtggcgcacctcaagcaggtcgtctgcgtgaaggggtga
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