Amycolatopsis carbonis: QRX50_21070
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Entry
QRX50_21070 CDS
T10496
Symbol
hrpA
Name
(GenBank) ATP-dependent RNA helicase HrpA
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
acab Amycolatopsis carbonis
Brite
Enzymes [BR:
acab01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
QRX50_21070 (hrpA)
Messenger RNA biogenesis [BR:
acab03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
QRX50_21070 (hrpA)
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Ortholog
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Gene cluster
GFIT
Other DBs
NCBI-ProteinID:
WIX83069
UniProt:
A0A9Y2INB0
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Position
4237508..4241389
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AA seq
1293 aa
AA seq
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MSTQSPLEALRARLPELMSRDEHRLRRRLDGARRSRDKQAVAERIAADVTAAELRVQRRR
ESVPKIEYPEELPVSKLKDEIGKAIAENQVVIVAGETGSGKTTQLPKICLELGRGIRGQI
GHTQPRRLAARTVADRIASELKTELGDAVGYKVRFTDQSGQDTLVKLMTDGILLAEIQTD
RMLRQYDTLIIDEAHERSLNIDFILGYVKQLLPRRPDLKVIITSATIDPERFSKHFDNAP
IVEVSGRTYPVEVRYRPIIDPDDPEADPDRDQTQGILDAVAELSAEGPGDVLVFLSGERE
IRDTADALNRLDLRSTEVLPLYARLSSADQHRVFQRHTGRRIVLATNVAETSLTVPGIKY
VVDPGNARISRYSHRTKVQRLPIEAISQASANQRKGRSGRTSDGICIRLYSEEDFESRPE
FTDPEILRTNLASVILQMTSLGLGDMAAFPFVEPPDRRQVADGVQLLQELGAFEVDDASK
LTDIGRKLAQLPVDPRMGRMVLEAARNGCVREVMIIAAALSIQDPRERPAEKQQAADQQH
ARFADPTSDFLAYLNLWEYVSEQQKALTGNQFRRLCRNEYLNYLRIREWQDIFSQLRQLA
KPLDISLSTTPADPQHVHTSLIAGLLSHIGLKDPAKGDYLGARGARFSVFPGSALFKKQP
RWVMSAELVETSRLWGRVNARIEPEWVEPLAAHVVKRSYSEPHWERKQGAVMAVEKVTLY
GVPLVADRRVNYGRIDPELSRELFIRHALVEGDWHTNHQFFSENRALLDEVEDLENRARR
RDILVDDETLFEFYDQRVPADVVSVRHFDSWWKKARRGDPDLLSFEKSMLINETAGGVRE
SDYPDSWTQGSQVFGLTYQFEPGADADGVTVHIPLPVLNQVTPDGFDWQVPGLRSELVTA
LIKSLPKALRRNFVPAPDTAAYVLSRVSPSDGPLIEVLSDELFTLRRVDVPLSAYDLSSV
PDHLRVTFRVVDDRGRKVAEGKDLEALKLSLAPKVRETISKAANSIEKAGLTQPAFGSLP
RVFASTQRGHDVKAYPALVDEGSSVAVRLLDTPAQQQHAMWAGTRRMLRLNLNSPMKFIT
RSLSNSSKLVLNRNPHGSVAALLEDCVDCAVDSLMTAAGGPVWDEAGFAVLLDRVRAGLN
PAVLAVLTDVERILRAAIEVETVLPDTRGPAESLADLRAQLAGLVHAGFVTETGASRLRD
VERYLRGISRRLEKLPTEPTRDLQRTADVAWITEEYRSALAALPPGTSSPALAEVRWMIE
ELRVSFFAQTLGTAYPVSLKRITKALDDALAAS
NT seq
3882 nt
NT seq
+upstream
nt +downstream
nt
atgtccactcaatctcccctcgaggcgttgcgcgcgcggctgcccgagctgatgtcacgc
gacgagcaccgcctgcgccgtcggctcgacggcgcgcgccggtcacgcgacaagcaagcc
gtggccgagcgcatcgccgccgacgtgaccgccgccgagctgcgcgtgcagcgccggcgc
gagagcgtgcccaagatcgagtaccccgaagagctgccggtcagcaagctcaaggacgag
atcggcaaggcgatcgccgagaaccaggtggtgatcgtcgcgggcgagaccggctcgggc
aagacgacccagctgccgaagatctgcctcgagctcggccgcggcatccgcgggcagatc
gggcacacgcagccgcgccggctggccgcgcgcacggtcgccgaccgcatcgcgagcgag
ctgaagaccgagctgggcgacgccgtcggatacaaggtccgcttcaccgaccagtccggc
caggacacgctcgtgaagctgatgaccgacggcatcctgctcgccgagatccagaccgac
cggatgctgcgccagtacgacaccctgatcatcgacgaggcccacgagcgcagcctcaac
atcgacttcatcctcggctacgtcaagcagctgctgccgcgccggcccgacctcaaggtg
atcatcacctcggccacgatcgacccggagcgcttctcgaagcacttcgacaacgcgccg
atcgtcgaggtctccgggcgcacctaccccgtcgaggtccgctaccggccgatcatcgac
cccgacgaccccgaggccgatcccgatcgcgaccagacgcaaggcatcctcgacgccgtc
gcggagctgagcgccgaaggccccggcgacgtgctggtgttcctctccggcgagcgcgag
atccgcgacacggcggatgcgctcaaccgcctcgacctgcggagcaccgaggtgctgccg
ctgtacgcgcggctgtcgtcggccgaccagcaccgcgtgttccagcgtcacaccggccgc
cggatcgtgctggcgaccaacgtcgccgagacgtcgctgaccgtgccgggcatcaagtac
gtggtggacccgggcaacgcgcgcatctcgcgctacagccaccgcacgaaggtgcagcgg
ctgccgatcgaagcgatctcgcaggcgtcggccaaccagcgcaagggccgcagcggccgc
acgtccgacggcatctgcatccggctgtactccgaagaggacttcgagtcgcggccggag
ttcaccgacccggagatcctgcgcaccaacctcgcgtcggtgatcctgcagatgacctcg
ctcgggctgggcgacatggccgcgttcccgttcgtggagccgccggaccgccgccaggtc
gccgacggtgtgcagctgctgcaggagctcggcgcgttcgaggtggacgacgcgtcgaag
ttgaccgacatcggccgcaagctcgcgcagctgcccgtggacccgcggatggggcgcatg
gtgctggaagccgcgcgcaacgggtgcgtgcgcgaggtgatgatcatcgccgcggcactg
tccatccaggacccacgggagcggccggcggagaagcagcaggcggccgaccagcagcac
gcgcggttcgccgacccgacgtcggatttcctcgcgtacctcaacctgtgggagtacgtg
agcgagcagcagaaggcgttgacgggcaaccagttccgccgcctgtgccgcaacgagtac
ctcaactacctgcgcatccgcgagtggcaggacatcttcagccagctgcgccagctggcc
aagcccctcgacatctcgctgagcaccacgccggccgacccgcagcacgtgcacacgtcg
ctgatcgccgggctgctctcgcacatcggcctcaaggacccggccaagggcgactacctc
ggcgcgcgcggggcgcggttctcggtgttcccgggctcggcgctgttcaagaagcagccg
cgctgggtgatgtcggcggagctggtggagacctcgcggctgtgggggcgcgtcaacgcg
cgcatcgagccggagtgggtcgagccgctggccgcgcacgtggtgaagcggtcgtattcg
gagccgcactgggagcgcaagcaaggcgcggtgatggcggtggagaaggtgacgctgtac
ggcgtgccgctcgtcgccgaccgccgcgtgaactacgggcgcatcgatcccgagctctcg
cgcgagctgttcatccgccacgcgctggtggagggcgactggcacaccaaccaccagttc
ttctccgagaaccgcgcgctgctcgacgaggtcgaggacctggagaaccgcgcccgccgc
cgcgacatcctcgtggacgacgagaccctgttcgagttctacgaccagcgcgtgccggcc
gacgtggtgtcggtgcgccacttcgacagctggtggaagaaggcgcgccgcggcgacccg
gacctgctgtcgttcgagaagtccatgctcatcaacgagaccgcgggcggcgtgcgcgag
tcggactaccccgactcgtggacgcagggctcgcaggtcttcgggctcacctaccagttc
gagcccggcgcggacgccgacggtgtcaccgtccacatcccgctgcccgtgctgaaccag
gtgacgccggacggcttcgactggcaggtgccgggcctgcgttcggaactggtcaccgcg
ctgatcaagtcgctcccgaaagccttgcgacgcaacttcgtccccgctcccgacacggcc
gcgtatgtcctttcgcgagtgtcgccttcggatggtccgctgatcgaggtgctgtccgac
gagctgttcacgctgcgccgcgtcgacgtgccgctgtcggcctacgatctgtcttccgtg
ccggaccacctgcgggtgacgttccgtgtggtcgacgaccgcggccgcaaggtggccgag
ggcaaggacctggaggcgttgaagctcagtctcgccccgaaggtccgcgagacgatttcg
aaggccgccaacagcatcgagaaggcgggcctcacccagcctgctttcggttccctgcct
cgagttttcgcctccacgcagcgcggccacgacgtcaaggcgtacccggcgctggtggac
gagggttcgtcggtcgccgtccgcctgctggacaccccggcgcaacagcagcacgcgatg
tgggccggcacccggcgcatgctgcggctgaacctgaactcgccgatgaagttcatcacc
cgctcgttgtccaattcctccaagctcgtgctgaaccgcaacccgcacggcagcgtcgcc
gctctgctggaggactgcgtcgactgcgcggtcgactccctgatgaccgcggccggcggc
ccggtctgggacgaggccggtttcgcggtgctgctggatcgtgttcgtgcgggcttgaac
ccggccgtcctggcggtgctcacggacgtcgagcggatcctgcgcgcggccatcgaggtg
gagacggtcctgccggacacccgcggccccgcggagtcgctggccgacctccgcgcgcag
ctcgccggcctggtccacgccggtttcgtgacggagaccggcgcttcgcggctgcgcgat
gtcgagcgctacctacgcggaatctcgcgccggctggagaaactgcccaccgagccgacc
cgcgacctgcaacgcacggccgacgtcgcgtggatcacggaggaataccggtcggccctg
gccgcgctgccgccggggacgtcgtcgcccgcgctggcggaggtgcggtggatgatcgag
gagctgcgggtgtccttcttcgcccagaccctggggacggcgtatccggtgtcgctgaaa
cggatcacgaaagcgttggacgacgccttggcggctagctga
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