Amycolatopsis carbonis: QRX50_25280
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Entry
QRX50_25280 CDS
T10496
Name
(GenBank) ribonuclease J
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
acab Amycolatopsis carbonis
Pathway
acab03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
acab00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
QRX50_25280
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
acab03019
]
QRX50_25280
Messenger RNA biogenesis [BR:
acab03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
QRX50_25280
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_J_b_CASP
RNase_J_C
Lactamase_B
Lactamase_B_2
RMMBL
Anti-Pycsar_Apyc1
DUF2201
Motif
Other DBs
NCBI-ProteinID:
WIX74889
UniProt:
A0A9Y2MTG3
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Position
5086559..5088256
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AA seq
565 aa
AA seq
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MSSLPPGPGPTNLPPALPEGALRVVALGGIGEVGRNMTVFEYDGRLLIVDCGVLFPEDDQ
PGVDLILPDFRAIEERLDDVEGLVLTHGHEDHIGAVPFLLRLRPDLPIYGSRFTNALLAA
KAKEHRQRPNLIEVREGERRKVGTFDLEFFAVNHSIPDALAVAIRTPAGVVLHTGDIKLD
QLPLDGRLTDLAGFSRLGDEGVDLFCVDSTNAEVPGFVMPERDIGPVLDDVIRRVDQRVI
VACFASHVHRVQQVLDAAVRHGRRVAFVGRSMVRNMGIAAELKLLEVPDGLLVDLDQAST
LPESKVLFVSTGSQGEPLSALSRMARGEHRQISIRAGDTVVLASSMIPGNETAVFGVVNG
LTRLGANVVHQGNAKVHVSGHASAGELLYLYNAVRPSNVMPVHGEWKHLRANGELAIRTG
VSPDNVVIAEDGVVVDLVDGKASRTGRVEVGHVYVDGLSVGDVGESTLSDRLVLGEGGFI
SISVAVDSSTGRAVSSPTVSGRGFSDDPKALDAVVPLVEMELARTEAEGITDTHRIAQAV
RRVVGRWVADTYRRRPMIVPTVIPV
NT seq
1698 nt
NT seq
+upstream
nt +downstream
nt
gtgagctcacttccccccggacccggacccacgaacctcccgcccgcccttcccgaaggc
gccctgcgcgtcgtcgcgctgggcggcatcggcgaggtcggacgcaacatgaccgtcttc
gagtacgacggcaggctgctgatcgtcgactgcggcgtcctctttcccgaggacgaccag
cccggcgtcgacctgatcctgcccgacttccgcgcgatcgaggagcggctcgacgacgtc
gagggcctcgtgctcacccacgggcacgaagaccacatcggcgccgtcccgttcctgctg
cggctgcggcccgacctgccgatctacggttcgcggttcaccaacgcgctgctcgcggcc
aaggccaaggagcaccgccagcggccgaacctcatcgaggtgcgcgaaggcgagcggcgc
aaggtcggcacgttcgacctcgagttcttcgccgtcaaccactcgatcccggacgcgctg
gcggtcgccatccgcacgcccgccggggtcgtgctgcacaccggtgacatcaagctcgac
cagctgccgctcgacgggcgcctcaccgacctcgcgggcttctcgcgcctgggcgacgag
ggcgtggacctgttctgcgtcgactcgaccaacgccgaggtgcccgggttcgtcatgccc
gagcgcgacatcggcccggtgctcgacgacgtgatccgccgggtcgaccagcgcgtgatc
gtcgcgtgcttcgcgagccacgtgcaccgcgtccagcaggtgctggacgccgcggtgcgc
cacggtcgccgcgtggcgttcgtgggccggtcgatggtccgcaacatgggcatcgcggcc
gagctgaagctgctggaggtgccggacggcctgctcgtggacctcgaccaggcgagcacg
ctgccggagagcaaggtcctgttcgtctcgaccggttcgcagggcgagccgctctcggcg
ctctcgcgcatggcgcgcggtgagcaccggcagatctcgatccgcgcgggcgacaccgtc
gtgctcgccagctcgatgatcccgggcaacgagaccgccgtgttcggcgtggtcaacggc
ctgacccggctcggcgccaacgtcgtgcaccagggcaacgcgaaggtccacgtgtccggc
cacgcgtcggccggcgagctgctctacctgtacaacgccgtccgcccgagcaacgtgatg
ccggtgcacggcgagtggaagcacctgcgcgccaacggcgagctggccatccgcacgggc
gtgtcgccggacaacgtggtgatcgccgaggacggcgtggtcgtggacctcgtcgacggc
aaggcctcgcggaccggccgcgtcgaggtggggcacgtgtacgtggacggcctgtcggtg
ggcgatgtcggcgagtcgacgctgtccgaccggctggtgctgggcgagggcgggttcatc
tcgatcagcgtcgccgtcgactccagcacgggccgcgcggtcagcagcccgacggtgtcg
ggccgcggcttctccgacgacccgaaggccctcgacgccgtggtgccgctcgtggagatg
gagctggcgcgcacggaggccgagggcatcaccgacacccaccgcatcgcgcaggcggtg
cgccgggtcgtcgggcgctgggtcgccgacacctaccggcgccggccgatgatcgtgccg
acggtcatcccggtctga
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