KEGG   Amycolatopsis carbonis: QRX50_25280
Entry
QRX50_25280       CDS       T10496                                 
Name
(GenBank) ribonuclease J
  KO
K12574  ribonuclease J [EC:3.1.-.-]
Organism
acab  Amycolatopsis carbonis
Pathway
acab03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:acab00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    QRX50_25280
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:acab03019]
    QRX50_25280
Messenger RNA biogenesis [BR:acab03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Ribonucreases
     QRX50_25280
SSDB
Motif
Pfam: RNase_J_b_CASP RNase_J_C Lactamase_B Lactamase_B_2 RMMBL Anti-Pycsar_Apyc1 DUF2201
Other DBs
NCBI-ProteinID: WIX74889
UniProt: A0A9Y2MTG3
LinkDB
Position
5086559..5088256
AA seq 565 aa
MSSLPPGPGPTNLPPALPEGALRVVALGGIGEVGRNMTVFEYDGRLLIVDCGVLFPEDDQ
PGVDLILPDFRAIEERLDDVEGLVLTHGHEDHIGAVPFLLRLRPDLPIYGSRFTNALLAA
KAKEHRQRPNLIEVREGERRKVGTFDLEFFAVNHSIPDALAVAIRTPAGVVLHTGDIKLD
QLPLDGRLTDLAGFSRLGDEGVDLFCVDSTNAEVPGFVMPERDIGPVLDDVIRRVDQRVI
VACFASHVHRVQQVLDAAVRHGRRVAFVGRSMVRNMGIAAELKLLEVPDGLLVDLDQAST
LPESKVLFVSTGSQGEPLSALSRMARGEHRQISIRAGDTVVLASSMIPGNETAVFGVVNG
LTRLGANVVHQGNAKVHVSGHASAGELLYLYNAVRPSNVMPVHGEWKHLRANGELAIRTG
VSPDNVVIAEDGVVVDLVDGKASRTGRVEVGHVYVDGLSVGDVGESTLSDRLVLGEGGFI
SISVAVDSSTGRAVSSPTVSGRGFSDDPKALDAVVPLVEMELARTEAEGITDTHRIAQAV
RRVVGRWVADTYRRRPMIVPTVIPV
NT seq 1698 nt   +upstreamnt  +downstreamnt
gtgagctcacttccccccggacccggacccacgaacctcccgcccgcccttcccgaaggc
gccctgcgcgtcgtcgcgctgggcggcatcggcgaggtcggacgcaacatgaccgtcttc
gagtacgacggcaggctgctgatcgtcgactgcggcgtcctctttcccgaggacgaccag
cccggcgtcgacctgatcctgcccgacttccgcgcgatcgaggagcggctcgacgacgtc
gagggcctcgtgctcacccacgggcacgaagaccacatcggcgccgtcccgttcctgctg
cggctgcggcccgacctgccgatctacggttcgcggttcaccaacgcgctgctcgcggcc
aaggccaaggagcaccgccagcggccgaacctcatcgaggtgcgcgaaggcgagcggcgc
aaggtcggcacgttcgacctcgagttcttcgccgtcaaccactcgatcccggacgcgctg
gcggtcgccatccgcacgcccgccggggtcgtgctgcacaccggtgacatcaagctcgac
cagctgccgctcgacgggcgcctcaccgacctcgcgggcttctcgcgcctgggcgacgag
ggcgtggacctgttctgcgtcgactcgaccaacgccgaggtgcccgggttcgtcatgccc
gagcgcgacatcggcccggtgctcgacgacgtgatccgccgggtcgaccagcgcgtgatc
gtcgcgtgcttcgcgagccacgtgcaccgcgtccagcaggtgctggacgccgcggtgcgc
cacggtcgccgcgtggcgttcgtgggccggtcgatggtccgcaacatgggcatcgcggcc
gagctgaagctgctggaggtgccggacggcctgctcgtggacctcgaccaggcgagcacg
ctgccggagagcaaggtcctgttcgtctcgaccggttcgcagggcgagccgctctcggcg
ctctcgcgcatggcgcgcggtgagcaccggcagatctcgatccgcgcgggcgacaccgtc
gtgctcgccagctcgatgatcccgggcaacgagaccgccgtgttcggcgtggtcaacggc
ctgacccggctcggcgccaacgtcgtgcaccagggcaacgcgaaggtccacgtgtccggc
cacgcgtcggccggcgagctgctctacctgtacaacgccgtccgcccgagcaacgtgatg
ccggtgcacggcgagtggaagcacctgcgcgccaacggcgagctggccatccgcacgggc
gtgtcgccggacaacgtggtgatcgccgaggacggcgtggtcgtggacctcgtcgacggc
aaggcctcgcggaccggccgcgtcgaggtggggcacgtgtacgtggacggcctgtcggtg
ggcgatgtcggcgagtcgacgctgtccgaccggctggtgctgggcgagggcgggttcatc
tcgatcagcgtcgccgtcgactccagcacgggccgcgcggtcagcagcccgacggtgtcg
ggccgcggcttctccgacgacccgaaggccctcgacgccgtggtgccgctcgtggagatg
gagctggcgcgcacggaggccgagggcatcaccgacacccaccgcatcgcgcaggcggtg
cgccgggtcgtcgggcgctgggtcgccgacacctaccggcgccggccgatgatcgtgccg
acggtcatcccggtctga

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