Alkalicella caledoniensis: HYG86_05355
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Entry
HYG86_05355 CDS
T07204
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
acae
Alkalicella caledoniensis
Pathway
acae03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
acae00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
HYG86_05355
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
acae03019
]
HYG86_05355
03009 Ribosome biogenesis [BR:
acae03009
]
HYG86_05355
Enzymes [BR:
acae01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
HYG86_05355
Messenger RNA biogenesis [BR:
acae03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
HYG86_05355
Ribosome biogenesis [BR:
acae03009
]
Prokaryotic type
rRNA helicases
HYG86_05355
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
AAA_19
AAA_22
CMS1
Cas3-like_C_2
Nod1
VipE
ERCC3_RAD25_C
Motif
Other DBs
NCBI-ProteinID:
QNO14238
UniProt:
A0A7G9W6C6
LinkDB
All DBs
Position
1082676..1084127
Genome browser
AA seq
483 aa
AA seq
DB search
MTKTNFSDYALSNDLLKAISMLNFKNPTKVQELVIPAVLEKKDIIVKSQTGSGKTAAFAI
PISEVVNWDENKPQALVLAPTRELAIQIKEDFFNIGRFKRLKVSAVYGKFPFYMQERELK
QKTHVVVGTPGRIIDHLERGTLDTSMIEYLVIDEADEMLNMGFIEQIETIISNLPKERVT
MLLSATLPKELETLCSNYMNDPIYAEIEEQSSAVDRIYQEGYIVDEEDKLSLLRDITILE
NPDSCIIFCNTKLMVDDVYNELSKLNYTCDRIHGGMEQRDRIRVMNDFKQGYFRYLVATD
VAARGIDIDSISLVINYDIPQDSESYVHRIGRTGRKDREGRAITFVSPNEIKYLNDIHKY
IQREIPLKERPDKHAVLDSKKDFVDKINSAPVLKETKGAQLNKGIMKLHINAGKKTKMRP
VDVVGTLCSIEGISAEDIGIINILDISTFVEILNNKGEIVYRELQKKPIKGRMRNVSKVL
DKK
NT seq
1452 nt
NT seq
+upstream
nt +downstream
nt
atgacaaaaaccaattttagtgattatgcactgagcaatgacttattaaaagccattagt
atgttaaattttaaaaatcctactaaggttcaagaacttgtaatccctgctgttttagaa
aaaaaggatataattgttaagtcacaaacaggaagtgggaaaactgcagcttttgctatt
cccatcagcgaggtagtgaattgggatgaaaataagccccaggccttagtcctcgctccc
acaagggaactggctattcaaatcaaggaagatttttttaatataggtaggtttaaaagg
cttaaggtgtctgcagtttatggaaagtttccattttatatgcaagaaagggagctaaag
caaaaaacccacgtggttgtgggtacacctggtcgtatcatagatcatttagaaagagga
accctagatacatctatgatagagtaccttgtcatagatgaagctgatgaaatgctaaac
atgggctttatagaacagattgaaacaataataagtaatctacctaaagagcgggtgacc
atgctactgtcagctactttgcccaaagagctagaaaccttatgtagcaactacatgaat
gatcccatatatgcagaaattgaagagcaaagttcagctgtcgatagaatatatcaagag
ggatatatagtagacgaagaagataagctaagtcttctaagggatataactattttagaa
aacccagatagttgtatcatattttgcaacacaaaacttatggtagatgacgtatataat
gagctttcaaagttgaattacacctgtgatagaatacatggtggaatggagcaacgggat
agaattagggtaatgaatgatttcaaacagggatattttagataccttgtagctacagat
gttgcagctcggggaatagatatagatagtatctccctggtaattaattatgatattcct
caagactctgaaagctatgtacataggataggaagaacggggcgtaaagatagagaaggc
cgagcaattacctttgtatcaccaaatgaaattaagtacttaaatgatatacataaatac
attcaaagagagattccattaaaggaaagaccagataaacatgctgttttagattcaaaa
aaagattttgttgacaaaataaattcagcacctgttcttaaagaaactaaaggtgcccag
cttaacaaaggtattatgaagctacatataaatgcagggaagaaaacaaaaatgagacca
gtggatgtggtaggcaccctttgtagtattgaaggtatatcagcagaagatatcgggatc
atcaatatacttgatatatctacctttgttgaaatattaaataacaaaggagaaatagtg
tatcgggaattacaaaaaaagcctatcaaaggaagaatgcgcaatgttagcaaagtgcta
gataaaaaataa
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