Alkalicella caledoniensis: HYG86_08835
Help
Entry
HYG86_08835 CDS
T07204
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
acae
Alkalicella caledoniensis
Pathway
acae03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
acae00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
HYG86_08835 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
acae03400
]
HYG86_08835 (mfd)
Enzymes [BR:
acae01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
HYG86_08835 (mfd)
DNA repair and recombination proteins [BR:
acae03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
HYG86_08835 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
TRCF
UvrB_inter
CarD_TRCF_RID
Helicase_C
ResIII
Cas3-like_C_2
SNF2-rel_dom
AAA_22
Siah-Interact_N
RecG_dom3_C
CCDC14
UB2H
Motif
Other DBs
NCBI-ProteinID:
QNO14871
UniProt:
A0A7G9W859
LinkDB
All DBs
Position
complement(1803231..1806707)
Genome browser
AA seq
1158 aa
AA seq
DB search
MNLEKIKETVEFQEIVRNMDLGRKQLIYGLSGGQKGFLLSSLVKETGKDLIIITNSQSNS
EKIFREMNTYLGEDNVYHFPANPLMPGEVDFRSKDIEIERISTLHAKSTGKARVVVAQIT
SCLEILPHWEAINKAKIILKVDEDLSFPILEKKLIQLGYVRCGIVEKQGDFSIRGSVIDI
FPSIGKKPIRLEFFGDTLESIRYFDVRTQRSSMENIKEFDLFTNTLNVLENHKKEALLLK
LNNFLNQAKDSKIKQKLRQDIEKIENDIIFDELTQYNHEIYNGGQSLIDIFSDHIIVMDE
TPFIKKDLETWLKDYSERLKQLIEKGEVFPKIPLYYQPEEIVTKVNKSNAMHFCLLLRTL
GNFKVDNTVSLPFRQAPVFAGNVELFFEEIKRLVKERFHIAIYYTKKEVMQGLKNLFVEK
KLEIESKDGPLIEFKEGFLEEGFIFDRAKIACFVERQIYKGTKGRKGKSLNQGVSITDIS
HLDIGDYIVHINHGIGVFKGINTLEVAGGKKDYIYVQYAGNDKLYIPTDQVEVLQKFVGG
EGKEPKIYSLSGNDWAKTTKKARQSIREMAQSLVYLYAKRQSSQGYQFDHDTTWQNQFED
NFPYTETVDQLKAIKEVKIDMEQPKPMDRLICGDVGYGKTEVAMRAAMKCVLDGKQVAVL
VPTTILAQQHFKNFKERFQDFPVNIEVFSRFRSKKETDEGLVNLMTGVVDIAIGTHKLLQ
KNVKFKDLGLIIVDEEQRFGVAHKERLKELKMNVDVLTMTATPIPRTLHMSMLGIRDLSV
IETPPEDRFPVQTYVLEYNEDVIATAIKREIERGGQVYFVYNRVQSIDAMAAKIQKMVPD
CKIAIGHGQMAETQLEKTMLGFLDGEYDVLLSTTIIETGLDIPNVNTLIIYDADKFGLSQ
LYQLRGRVGRSNRVAYSYLTYHKDKVLTEVAQKRLQAIKEFTDLGSGFKIAMRDLEIRGA
GNILGLEQHGFIASIGFDLYCQLLEEAIAELKGKKPKQRPLELNIEFPIDAYIPEKLMNR
SLKMSFYRRISMANNLENISEIEEEMYDRFGKLPEQVANLIDMARLKIYGQKIKIKSISA
KGLGYLQKPGENNYSVEIKFYPNTSLTGKELLEIYDKNKNLDFAMKNESLVIKLKKVEVN
SLLPETEKLLHQLIAKAN
NT seq
3477 nt
NT seq
+upstream
nt +downstream
nt
atgaacttagaaaagatcaaagaaaccgtagaatttcaagaaatcgtaaggaacatggat
ttggggagaaaacagttgatttacggtctgtctggaggacaaaagggttttttactgtct
agcctagtgaaagaaactggtaaagacctaataataataactaatagtcagagtaactct
gagaaaattttccgggaaatgaatacgtatttaggtgaagacaatgtctatcattttcct
gctaatcctttgatgccaggggaagttgactttaggagcaaggacatagaaattgaaaga
atatccaccctacatgcaaaatctactggaaaagccagagtagtagtagctcagataacc
agttgtcttgaaattttaccccattgggaggcaatcaacaaagcaaagattattctaaaa
gtggacgaggacctctcctttcctatattagagaaaaaactaatacagctgggatatgtt
agatgtggaatagtagaaaaacaaggagatttcagtataaggggttcagtaattgatatt
tttccatctataggcaaaaagccaatacgactagagttttttggtgacacattagaatcc
atacgttattttgatgttagaactcaaaggtcatccatggagaacataaaggaatttgac
ctttttacaaacaccttaaatgttttagaaaaccataagaaagaagctttattactaaaa
cttaataactttttaaaccaagcaaaggactctaaaattaagcaaaagctaaggcaagat
atagaaaaaatagaaaatgatattatatttgatgagttaactcagtataatcatgaaatt
tacaatggtggacaaagcttaattgacatatttagtgatcatataatagtaatggatgaa
acgccttttattaaaaaagatttagagacctggttaaaagattacagtgagagattaaaa
caattaatagaaaagggtgaagtcttccctaaaatcccactatattatcagccagaagaa
atagtgacaaaagttaacaaatcaaacgccatgcacttttgcttgcttttaagaacctta
ggaaattttaaagttgataatacagtatctttaccctttaggcaagctcccgtatttgct
ggtaatgtggagttatttttcgaagaaataaaaagattggttaaagagagatttcacatt
gccatctactatacaaaaaaagaagtaatgcaaggacttaaaaacttgtttgtagagaaa
aaactagaaatagagtccaaagatggtccactaattgaatttaaggaagggtttcttgaa
gaaggatttatatttgacagagctaagatagcctgctttgttgaaagacagatttataag
ggcacaaaaggcagaaaaggtaaatcattaaatcaaggagtaagtattacagatatttct
cacttagacataggtgattatatagttcacatcaatcatggtattggtgtttttaagggg
attaacaccttagaagttgccggagggaaaaaggactacatatacgttcagtatgctggt
aacgacaaattatatataccaactgatcaggtagaagtactacaaaaatttgttggaggg
gaaggcaaggaaccaaagatatacagccttagtggcaatgactgggcaaaaacaacaaaa
aaagctagacaatctatccgggagatggcccaaagtctagtatacttgtatgcaaagagg
caaagtagccaaggatatcagtttgaccatgacacaacatggcagaaccagtttgaagat
aactttccatatacggaaacagtagatcagttaaaggctataaaagaagttaaaatagat
atggagcaaccaaaacccatggatcgactgatatgtggggatgttgggtatgggaagaca
gaagtagctatgagggctgccatgaaatgtgtactagatggaaaacaagtagctgtttta
gttcccaccacaatattagctcagcaacactttaagaactttaaagagaggtttcaagac
tttccagtaaatattgaagtttttagccggtttaggtctaagaaagagacagatgaaggg
ctagttaatctaatgacaggagttgtcgatatagccataggaacacataaacttctacaa
aagaatgtaaaatttaaggatttaggcttaataatagtagatgaagaacaacgctttggt
gttgcacataaagagagattaaaggaacttaagatgaatgtagatgtattaaccatgacg
gcaactccaatacctaggacgttacacatgtcaatgcttggtataagggatttaagtgtt
atcgaaactccccccgaggacaggttcccagtacaaacctatgtgttggaatacaatgaa
gatgtaatagcaacagctatcaaaagagaaattgaaaggggtggacaggtctattttgta
tacaatagagtacaatccatagatgccatggctgcaaaaatacaaaagatggttcctgat
tgtaaaatagcaattgggcacggccagatggcagaaactcagctagaaaaaacaatgcta
ggctttttagacggtgagtatgatgtgttactaagtacaacaataatagaaacagggcta
gatatacccaatgtaaatacattgataatttatgatgcagacaaatttggtctttcgcaa
ttatatcaactaaggggtagagttggcaggagtaacagagtagcatattcatacttgaca
tatcataaagacaaagtgctgacagaagtggcccaaaaaagactacaagccattaaagaa
tttacagatctaggttcaggattcaaaatagcaatgagagacttagagatacgtggtgca
ggaaatatattaggactagaacaacacggatttatagctagtataggctttgatctttac
tgtcagttgctagaagaagctatagcagagcttaagggtaaaaaacctaaacagagacct
ttagagctaaatatagagtttcctattgatgcatatatacctgaaaaacttatgaatagg
tcgttaaagatgtcattttatagaaggatttctatggcaaataacttggagaacatctca
gaaatcgaagaagaaatgtatgatagattcgggaagttgccagaacaagtggctaatctt
attgatatggcaagactaaaaatatatggacaaaagattaagattaaatcaatcagtgct
aaggggctaggatatcttcaaaaacccggcgagaataattatagtgtcgaaattaaattt
tatcctaatacaagcttaacaggtaaagaactccttgaaatatacgataaaaacaagaat
ttagactttgccatgaaaaatgaatcacttgtgattaagctgaaaaaggtagaagtgaat
tccttgttgccagagacagaaaagttattgcatcaattaattgccaaagcaaattaa
DBGET
integrated database retrieval system
