Alkalicella caledoniensis: HYG86_10010
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Entry
HYG86_10010 CDS
T07204
Symbol
recQ
Name
(GenBank) DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
acae
Alkalicella caledoniensis
Pathway
acae03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
acae00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
HYG86_10010 (recQ)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
acae03019
]
HYG86_10010 (recQ)
03400 DNA repair and recombination proteins [BR:
acae03400
]
HYG86_10010 (recQ)
Enzymes [BR:
acae01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
HYG86_10010 (recQ)
Messenger RNA biogenesis [BR:
acae03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
HYG86_10010 (recQ)
DNA repair and recombination proteins [BR:
acae03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
HYG86_10010 (recQ)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RQC
DEAD
HTH_40
Helicase_C
HRDC
RecQ_Zn_bind
Helicase_Sgs1
Cas3-like_C_2
HTH_38
UPF0122
HTH_24
HAGH_C
zf-CXXC
Motif
Other DBs
NCBI-ProteinID:
QNO15073
UniProt:
A0A7G9W8R1
LinkDB
All DBs
Position
2012124..2014304
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AA seq
726 aa
AA seq
DB search
MDIFKALKVYFGYDTFKRGQEELINGIVNGRDALGIMPTGGGKSLCYQLPAMVLSGVTVV
ISPLIALMKDQVDALTEMGIEATFLNSTLDRAEANEREQGIRDNKYKLIYVAPERLSSFD
FKELISNIDVSLVAVDEAHCISQWGHDFRPSYMEIPRFINSLNRRPVVAAFTATATIEVI
EEIERLIQLRNPLSLSTGFDRPNLLYKVVKPSDKFSYLMNFLQGYGQTEAGVIYCSTRNT
VESLVKKLQDKGISAVGYHGGMNAEERQDNQEAFIFNRSRIIVATNAFGMGIDKPDVRFV
VHYNMPKNMEAYYQEAGRAGRDGEESQCILMYSPSDIVKQKLIIQNEYLSPDREQLLYKN
LQILIDYCHTNDCLRMQILNYFEEDVPNKDCGKCSNCLDESEMIDITVEAQKILSCIYRA
KERFGAEAITQILKGSRNKRIIELGLDKISTYNIMSEYNANVIKEIIMTLSAKGYIHITT
DKFPVLKLTTNSRKVLQGEEKVYHKKDSVDNAATKDDKKEKAKKVIEQFDQELFNSLKEL
RATLSEEKQLPPFMIFHDSTLKEMAAAYPQNEEGFLDISGVGVKKYESYGEEFIRVIQAH
CRENHIAGDIAKGKNIKEVKIAVESNVDRYEETYKCYEKGLSLVEIAQERNFGVSTILKH
LKRCEEIGKTVDWDRFLKDPHKEMQILKVINHVGFEKLKPIKDSLPEDVTYDDIHLVIYK
NNFKES
NT seq
2181 nt
NT seq
+upstream
nt +downstream
nt
atggatatttttaaagcactgaaggtttattttggatatgatacctttaaaagggggcaa
gaagagttaatcaatggtatagtcaatgggagagatgcattgggtattatgcctactggt
ggaggtaaatccctgtgttatcaacttccggccatggtacttagtggtgtgacagtagtt
atttctccacttattgcccttatgaaagatcaggtggatgcactgacagaaatgggcata
gaggctacatttctaaatagtactttagatagggcagaggcaaatgaaagggagcagggc
ataagggataacaaatataagttaatttatgtggcccctgaacgtctcagctcctttgac
tttaaggaattaattagtaatatagatgtatctttagtagcagttgatgaggctcactgt
ataagccagtggggacatgattttagacctagttatatggagattcctaggtttattaat
tccttaaaccgtagacctgtcgtggcagcgtttacggccactgctaccatagaggtaatt
gaagaaatagaaagattgatacagctaaggaacccccttagcctaagtacaggtttcgat
agacccaatttactctataaagttgtaaaacctagcgataaattctcttatttgatgaat
tttctacagggctatggtcaaactgaagctggggttatatattgctcaacaaggaacact
gtggaatccctggtgaagaagcttcaagataaggggatttctgcagtggggtaccatgga
ggaatgaatgctgaggaaagacaagataatcaagaagcctttatatttaatagaagtagg
attattgtagcaacaaatgcctttggtatgggaatcgataagccagatgtacgttttgtg
gtacactacaacatgcctaagaacatggaggcatattatcaggaagctggtagagccggt
agagatggagaagaaagccaatgtattctcatgtactcaccgtcagatattgtaaagcaa
aaacttataatccaaaatgagtatctatcacctgacagagaacaattactttacaaaaac
ctgcagattcttatagattactgtcataccaatgactgcttgaggatgcagattctaaat
tattttgaagaagacgtacctaacaaagactgtggcaaatgcagtaactgcctcgatgaa
agtgaaatgatagacataacagtggaagcacaaaaaattctttcctgtatttatagggca
aaggaaagatttggggcagaggcaataacgcaaatattaaagggctcaaggaataagagg
attattgaacttggccttgataaaatatcaacctataatattatgagtgaatataatgcc
aatgtgataaaagaaattataatgacactatctgcaaaaggatatattcatataactacc
gacaagtttcctgttctaaaattaactacaaatagtcgcaaagtattgcaaggtgaagag
aaggtttatcataaaaaggattcagttgacaatgcagcaacaaaagatgataagaaggag
aaagccaagaaggtaatagaacagtttgaccaagagctgtttaatagcctcaaagagcta
agagctactctatctgaagaaaaacagctaccaccttttatgatttttcatgattcaaca
ttaaaggaaatggctgcagcatatccgcaaaatgaagaaggatttctagacatcagtggt
gtgggtgttaaaaaatatgaaagctatggtgaggaatttattagagtaattcaagcacac
tgccgtgaaaatcatatagctggtgacatagccaagggtaaaaatatcaaagaggtaaag
atagcagtagagtcaaatgtagatcgctatgaagaaacatataaatgttatgaaaaggga
ctatctttagttgagatagcgcaggagaggaattttggtgttagcactatcttgaaacac
ttaaaaagatgtgaggaaattggaaaaactgtggactgggatcggtttttaaaagacccc
cataaagaaatgcaaatattgaaggttattaaccatgtgggatttgagaagcttaaacca
attaaggatagcctgcctgaagatgtaacatacgatgacatacacttagtgatatataaa
aacaatttcaaagaaagttag
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