Alkalicella caledoniensis: HYG86_16350
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Entry
HYG86_16350 CDS
T07204
Symbol
rpoD
Name
(GenBank) RNA polymerase sigma factor RpoD
KO
K03086
RNA polymerase primary sigma factor
Organism
acae
Alkalicella caledoniensis
Pathway
acae02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
acae00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
HYG86_16350 (rpoD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
acae03021
]
HYG86_16350 (rpoD)
Transcription machinery [BR:
acae03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
HYG86_16350 (rpoD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_r3
Sigma70_r2
Sigma70_r4
Sigma70_r1_2
Sigma70_r1_1
Sigma70_r4_2
Exonuc_VII_L
Motif
Other DBs
NCBI-ProteinID:
QNO16738
UniProt:
A0A7G9WDH6
LinkDB
All DBs
Position
3344785..3345855
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AA seq
356 aa
AA seq
DB search
MERGKNRGILTYKDIMDYLQEFDLSSDQIDEYYEKIISMGIEVVDDSNDDLEVLEIDSDS
ESEEDSEDVDLDIDISLPEGISVNDPVRMYLKEIGRVPLLSATEEVNLAKRMENGDEEAK
RRLVEANLRLVVSIAKRYVGRGMLFLDLIQEGNLGLIKAVEKFDYTKGYKFSTYATWWIR
QAITRAIADQARTIRIPVHMVETINKLIRVSRQLVQELGREPLPEEIAKHMDMSPERVRE
ILKIAQEPVSLETPIGEEDDSHLGDFIEDQDAKAPAEAAAFELLREQLVDVLDTLTERER
KVLRLRFGLDDGRPRTLEEVGQVFGVTRERIRQIEAKALRKLRHPSRSKRLKDYLE
NT seq
1071 nt
NT seq
+upstream
nt +downstream
nt
atggaaagaggaaaaaataggggtattttaacctataaagatatcatggattacctacaa
gaatttgacttaagttcagatcaaattgacgaatactacgaaaaaatcatttccatgggt
atcgaagtggtagatgattctaatgatgatttagaggttttggagattgattctgacagt
gagtctgaagaggattctgaagatgtggatcttgatatagatatttctctacctgaaggt
atcagtgttaacgacccagtaaggatgtatcttaaggaaataggtagagttcctctgctt
tctgctacagaggaagtaaacctagctaaacgtatggaaaatggagatgaagaagcaaaa
aggcgattagtggaagcaaacctaagactcgttgttagtatcgcaaaaagatatgtaggt
agaggtatgttgttcttggatttaatacaagaaggaaaccttggacttataaaagctgtt
gaaaaattcgactatactaaaggatataaatttagtacttatgctacatggtggataagg
caagcaataactagagctatagccgatcaagctagaactatacgaattcctgttcacatg
gttgaaaccatcaataaacttattagagtttccagacaactagtacaagagctcggaagg
gaaccactacctgaggaaattgccaaacatatggatatgtctcctgaaagggtaagggaa
atcttaaagatagcccaagaacctgtttctttagaaacgcccataggtgaggaagatgat
agtcatctaggcgattttatcgaagaccaagatgcaaaagcaccagctgaagctgcagca
tttgaactgctaagggaacaactagtagatgttttagatacccttacagagagagaaaga
aaagtattaagacttagatttgggttagatgatggtagaccaaggactctagaagaagtt
ggtcaagtcttcggggttacccgggagagaatccgtcagattgaagccaaagcattaaga
aaattaagacacccaagtagaagtaaaaggcttaaggattacctagagtaa
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