Alienimonas californiensis: CA12_12540
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Entry
CA12_12540 CDS
T09792
Symbol
deaD
Name
(GenBank) ATP-dependent RNA helicase DeaD
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
acaf
Alienimonas californiensis
Pathway
acaf03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
acaf00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CA12_12540 (deaD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
acaf03019
]
CA12_12540 (deaD)
03009 Ribosome biogenesis [BR:
acaf03009
]
CA12_12540 (deaD)
Enzymes [BR:
acaf01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
CA12_12540 (deaD)
Messenger RNA biogenesis [BR:
acaf03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
CA12_12540 (deaD)
Ribosome biogenesis [BR:
acaf03009
]
Prokaryotic type
rRNA helicases
CA12_12540 (deaD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
Motif
Other DBs
NCBI-ProteinID:
QDT15173
UniProt:
A0A517P741
LinkDB
All DBs
Position
complement(1617190..1619400)
Genome browser
AA seq
736 aa
AA seq
DB search
MNTALLSASPSSQTDDDAPESARPEHVEPQAVEAAADDLPADSEAADADSEVAESNVADS
NVAESEVVGGAAEVVVEDDAPPEPHLETAALLNDAPPACGAGEPPIPAVTPPAASSAPAK
PQADVAPKQADVAPKKVELKKPEPQPEPKPEPAPKSGFAKLGLSAALLKALAEKGYETPT
PVQAEVIPAILAGRDVLGQAATGTGKTAAFALPLLDRMRIAETAPDAPDERPGPAIFCMA
PTRELAAQVAEAFRAYRGEMRVNILTVVGGESFGPQLSALRRGVDVVVATPGRALDLLKR
GSLDLSGLLACVLDEADEMLDMGFQDEIEAVLDFTPPGRQTVLVSATLAPRIQAIAAKHL
SNPVRIEIGKPQAAKGEDARVVHSAHFVRRQEKAAAIDRILEVDGAGPTLIFCRTRGGAD
DLTTELNRCGRRAAALHGGLTQDQRTKVVERLRGGTLNVVVATDVAARGLDVPELTHVVH
ADLPNGPEPFVHRCGRVGRAGRVGRVVSFLHPKERFKLVQFARAANADVAITDLPAADDV
VTGRLKKTRAALQDAATSPAFAKLREQLGPLLAELDKEFGPETLALAAAALAHRTAFGEE
PVGELGAPGPRDSGGPSDGPRGKGGPKFSGGPGGSKFKSGPKFAGKGAPRTPGPCPPGSA
RLWVSAGRDSGVRPGDLVGAIAGETHLSGGDIGAITIAPSFSLVDVPQQAADTVIQSLSR
GGLRGDKVTVRHDRQA
NT seq
2211 nt
NT seq
+upstream
nt +downstream
nt
atgaatactgccctgctctccgcgtcgccgtcctcccaaacggacgacgacgcccccgaa
tccgcccgccccgagcacgtcgaaccgcaggcggtcgaggccgccgccgacgatctgccc
gccgacagcgaagccgccgacgccgacagcgaagtcgcggaaagcaacgtcgctgacagt
aacgtcgcggaaagcgaagtcgtcggcggcgccgccgaggtcgtcgtcgaggacgacgcc
ccgccggaaccgcacctcgaaaccgctgcgctgctgaacgacgccccccccgcctgcggc
gccggcgaaccgccgatccccgccgtcacgccgcccgccgcctcgtcggcccccgcgaaa
ccgcaagcggacgtcgctcccaaacaggcggacgtcgcgcccaagaaggtcgaactgaag
aagccggaaccgcagccggagcccaagccggaaccggcgccgaagtccggcttcgccaag
ctggggctgtccgccgccctgctgaaggccctggcggagaagggttatgaaacgcccacc
cccgtgcaggccgaggtgatccccgcgatcctcgccggtcgggacgtgctcggtcaggcc
gcgaccggcaccggcaaaacggccgccttcgccctgccgctgctcgaccgcatgcggatc
gccgaaaccgccccggacgccccggacgagcggcccggcccggcgatcttctgcatggcc
cccacccgcgaactggccgcccaggtggccgaggccttccgcgcctaccgcggcgagatg
cgggtgaacatcctcaccgtcgtcggcggggagtccttcggtccgcagctctcggcgttg
cgccgcggcgtggacgtcgtcgtcgccacccccggccgggccctggacctgctgaagcgc
ggcagcctcgacctctccggcctgctggcctgcgtgctggacgaggccgacgagatgctc
gatatgggcttccaggacgaaatcgaggccgtcctcgatttcaccccgcccggccggcag
accgtgctggtgagcgccacgctggcgccgcggatccaggcgatcgccgccaagcacctg
tcgaacccggtccgcattgagatcggcaaaccgcaggccgcgaagggcgaggacgcccgc
gtggtgcacagcgcccacttcgtccgccgccaggagaaggccgccgcgatcgaccgcatc
ctcgaagtggacggcgccggcccgacgctgatcttctgccggacccgcggcggcgccgac
gacctcaccaccgagctgaaccgctgcggccgccgggccgcggccctgcacggcgggctc
acccaggaccagcggacgaaggtcgtcgaacgcctccgcggcgggacgttgaacgtcgtc
gtcgccacggacgtcgccgcccgcgggctggacgtgccggaactgacgcacgtcgtgcac
gccgacctgcccaacggcccggaacccttcgtgcaccgctgcggccgcgtcggccgggcc
ggccgcgtgggtcgggtggtttccttcctgcaccccaaggaacggttcaagctggtccag
ttcgcccgggccgccaacgcggacgtggcgatcaccgacctgcccgccgccgacgacgtc
gtcaccgggcggttgaagaagacgcgggccgccctgcaggatgcggcgacctccccggcg
ttcgccaagctgcgggagcagctcggcccgctgctggcggaactcgataaggagttcggt
ccggaaacgctggccctggcggccgcggcgctggcccaccgcacggcgttcggcgaggag
ccggtcggcgaactcggcgcccccggcccccgcgacagcggcggcccgagcgacggcccc
cgcggcaagggcggccccaagttcagcggcggccccggcgggtccaagttcaagagcggc
ccgaagttcgccggcaagggcgccccccgcacccccggcccctgccccccgggcagcgcc
cgcctgtgggtctccgccggccgcgactccggcgtccgccccggcgacctggtcggcgcc
atcgccggcgaaacgcacctgagcggcggcgacatcggcgcgatcacgatcgccccgagc
ttcagcctcgtcgacgtcccccaacaggccgccgacacggtgattcagtcgctgagtcgc
ggcggcctccgcggcgacaaggtgaccgtccgccacgaccgccaggcgtaa
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