Alienimonas californiensis: CA12_19370
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Entry
CA12_19370 CDS
T09792
Symbol
mfd
Name
(GenBank) Transcription-repair-coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
acaf
Alienimonas californiensis
Pathway
acaf03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
acaf00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
CA12_19370 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
acaf03400
]
CA12_19370 (mfd)
Enzymes [BR:
acaf01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
CA12_19370 (mfd)
DNA repair and recombination proteins [BR:
acaf03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
CA12_19370 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
TRCF
UvrB_inter
CarD_TRCF_RID
ResIII
Cas3-like_C_2
Adaptin_binding
RecG_dom3_C
AAA_22
Motif
Other DBs
NCBI-ProteinID:
QDT15842
UniProt:
A0A517P904
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All DBs
Position
2450823..2454212
Genome browser
AA seq
1129 aa
AA seq
DB search
MPATRRRGGTFPSAAPAVSAPAVGSLADLPGLLLRDAQFAPVAAALARGDGAALEGAWAG
SAAAAIAGLVQSEEAGGVGRPLLVVTARVAGTDHFAADVAAMLGEDAVGRSVALFPARDG
LTAAPDPADPVFAARAGALNRIEDEDSARRPRVLVAPIQALMQPVPSKEARAAATRTLSV
GEEADPEELMRWLADRGLERVPRIEMPGEFSLHGGIFDVWPAGETDPLRVEFAFDEVDSL
RTFDPVSQRKIEGLERARLTCLPAPRPDAAGGAPPAGDGEPGGDERAIGTASLLDSLPAE
YAVALLDLAEITDEGKHYLNRLDDPRGLYTVRTVLARCTQRPSVTLARIGASSYETTGRL
RVEAVEKFAGPKGQAIEQLDLVLGEGERALIACHNAGELKRLGELIAEVEAENGPALAER
VTLCVGELTAGFRLVDHGLLVLTDHELFGRAGVRTGGGPRRPAESRAIDNFLDLSDGDLI
VHLTHGIGRFRGLKALDQRGQKEEHLELEFAGDVRVFVPASLIHLVQKYVGATKAAPKLS
KLGTLGWSKKKKQAADAVEDMAADMLRMQAARQSEPGLPHAEPTDYVEEFAAAFPYEPTP
DQASAFGEIQADLSLPRPMDRLICGDVGYGKTEVAMRAAFRAVDGGRQVAVLVPTTVLCE
QHARSFAERMAEFPITVESLSRFRTRREQKQVLKGLKEGTVDVVIGTHRLVSPDIKFADL
GLLVIDEEQRFGVDVKEALKQIRLQVDVLTLSATPIPRTLHMSLLGLRDISNLTTPPQGR
QPIETRVTRWDDAMIRHALIRELNRGGQAYFVHNRVQDIERVRDRVLQIVPEATAGIVHG
QMPPTQVEETMAEFVRGRIDILLATTIIESGLDVPNANTMFIHEADRYGLADLHQLRGRV
GRHHNRAYCYLLLKEGRMLTDVAAKRLKAIEEYSELGAGFKIAMRDLEIRGAGNILGTEQ
SGQINAVGYELYCQLLENAVRTLKGEPIRKPLAVNVDLPISAFLPDGYVPPGRTKLEVYR
KLSNVRGTPELAEFAEELKDRFGPPPAPVGRLLAVKRLQLACRDWSFTDVKIEDGYVRFN
YEDADKMTELKGRLKRNLRVADRRTAYIPLPDPAATDEALLEDLMRFLG
NT seq
3390 nt
NT seq
+upstream
nt +downstream
nt
atgcccgccacccgtcgccgcggcgggacgttcccgtcggcggcgcccgccgtttccgcc
ccggccgtcggctccctggccgatctgccgggattgctgctgcgcgatgcccagttcgcc
cccgtcgccgccgccctcgcccggggcgacggggcggccctggagggggcgtgggccggc
tccgccgccgcggcgatcgccggtctggtgcaaagcgaggaggcgggcggcgtcggccgg
ccgctgctggtcgtcaccgcccgggtcgccggcacggaccacttcgccgcggacgtcgcc
gcgatgctcggggaggacgccgtcggccgctccgtcgccctgttcccggcccgcgacggg
ctcaccgcggccccggacccggcggaccccgtcttcgccgcccgggccggggcgttgaac
cggattgaagacgaggactccgcccgccgcccgcgggttctggtcgccccgattcaggcc
ctcatgcagccggtgccgtcgaaagaggcgcgggcggcggcgacccgcacgctgagcgtc
ggcgaggaggcggacccggaagagttaatgcgctggctcgccgaccgcgggctcgaacgg
gtgccgcggatcgagatgcccggcgagttcagcctgcacggcgggatcttcgacgtctgg
cccgccggcgaaacggacccgctgcgggtggagttcgccttcgacgaggtggactccctg
cggacgttcgacccggtctcgcagcgaaaaattgaggggctggagcgggcccgcctgacc
tgcctgccagccccgcggccggacgcggcggggggcgcgccgcctgccggtgacggcgaa
ccggggggcgacgaacgtgcgattggaaccgcgtcgttgctggacagtttgccggcggag
tacgccgtcgcgttgctggacctcgcggaaatcaccgacgagggcaagcattatttgaat
cggctcgacgacccgcgggggttgtatacggtccgcaccgtgctcgcccgctgcacgcag
cggcccagcgtgacgctcgcccggatcggcgccagcagttacgaaacgaccggccggctg
cgggtcgaagcggtcgaaaagttcgccgggccgaaggggcaggcgattgaacagttagat
ctcgtgctcggcgagggcgagcgggcgctgatcgcctgtcataatgcgggcgagttgaag
cggctgggcgaattgatcgccgaggtggaggcggagaacggcccggcgctggcggagcgg
gtcacgctctgcgtaggggaactgaccgccggctttcggctggtcgatcatgggctattg
gtcctgaccgaccatgaactcttcggccgggccggggtgcgaacgggcggcgggccgcgg
cgtccggcggagtcgcgagcgatcgataactttctcgatctgtccgacggcgacctgatc
gtgcacctcacgcacggcatcgggcgttttcgcgggctgaaggcgctcgaccagcggggg
cagaaggaggagcatttagaactggagttcgccggcgacgtgcgggtgttcgtgccggcg
tcgttgattcatctggtgcaaaaatacgtcggggcgacgaaggccgccccaaagctgtcg
aagctcggcacgctggggtggtcgaagaagaaaaagcaggcggcggacgcggtcgaggat
atggccgcggacatgctccgcatgcaggcggcccgccagtccgagcccggcctgccgcat
gcggagccgaccgactacgtcgaggaattcgccgccgcgtttccgtatgaaccgacgccg
gaccaggcgtcggcgttcggggagattcaagcggacctgtcgctgccgcggccgatggac
cgcctgatctgcggggacgtgggctacggtaagacggaggtggcgatgcgggccgccttc
cgggccgtcgacggcggccggcaggtcgctgttttagtgccgacgacggtgctgtgcgaa
cagcacgcccgcagcttcgccgaacgcatggcggagtttcccatcaccgtcgaaagcctc
tctcgcttccgcacccgccgggagcagaaacaggtcttgaaaggccttaaggagggcacg
gtggacgtggtgatcggcacgcaccggctcgtctcgcccgatattaagttcgcggacctg
ggcctgctggtgatcgacgaggaacagcggttcggcgtggacgtgaaggaggcgctcaag
cagatccgcctgcaggtcgacgtgctgacgctgtccgccacgccgattccccgcacgctc
catatgagcctgctggggttgcgcgatatttccaatctcaccaccccgccgcaggggcga
cagccgatcgaaactcgcgtgacccgctgggacgacgcgatgatccggcacgcccttatt
cgcgaattgaatcgcggcgggcaggcctatttcgtgcacaaccgcgtgcaggacatcgaa
cgcgtccgcgaccgggtgttgcagatcgtgccggaggcgaccgccggcatcgtgcacggc
cagatgcccccgacgcaggtcgaggagacgatggcggagttcgtccgcggccgaattgat
atcctgctggcgacgacgattatcgaatcgggcctggacgtgcccaacgccaacacgatg
ttcattcacgaggccgaccgctacggcctggcggatctgcatcaattacgaggtcgagtc
ggccggcatcacaaccgggcctactgctatctgttgctcaaggaagggcggatgctgacc
gacgtggcggcgaagcggctcaaggcgatcgaggaatattccgaactcggcgccggcttc
aagatcgccatgcgggacctggagatccgcggcgccggcaacatcctcggcacggagcag
agcgggcagatcaacgccgtcggctacgagttgtattgccagttgctggaaaacgcggtc
cgcacgctgaagggcgagcccatccgcaagccgctggcggtgaacgtcgacctgccgatc
tccgccttcctgccggacggctacgtcccgccgggccgcacgaagctggaggtctaccgc
aagctgtccaacgtccgcggcacgccggagctggcagagttcgccgaggaattgaaggac
cgcttcggccccccgcctgcgcccgtgggccggctgctggcggtcaagcggctgcaattg
gcctgccgcgactggtcgttcacggacgtgaaaatcgaggacggctacgtccgcttcaat
tacgaggacgcggacaagatgaccgaattgaagggccgcctcaagcggaaccttcgggtc
gccgaccgccgcacggcctacatcccgctgcccgatcccgcggcgacggacgaggcgctg
ctggaagacctgatgcggttcctcggctga
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