Alienimonas californiensis: CA12_32450
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Entry
CA12_32450 CDS
T09792
Symbol
cshA
Name
(GenBank) DEAD-box ATP-dependent RNA helicase CshA
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
acaf
Alienimonas californiensis
Pathway
acaf03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
acaf00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CA12_32450 (cshA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
acaf03019
]
CA12_32450 (cshA)
03009 Ribosome biogenesis [BR:
acaf03009
]
CA12_32450 (cshA)
Enzymes [BR:
acaf01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
CA12_32450 (cshA)
Messenger RNA biogenesis [BR:
acaf03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
CA12_32450 (cshA)
Ribosome biogenesis [BR:
acaf03009
]
Prokaryotic type
rRNA helicases
CA12_32450 (cshA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Helicase_C_2
Cas3-like_C_2
Motif
Other DBs
NCBI-ProteinID:
QDT17133
UniProt:
A0A517PCM7
LinkDB
All DBs
Position
complement(4049418..4050818)
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AA seq
466 aa
AA seq
DB search
MPTTTRAKRPAARRTAQTSPAADKRRSADDSPPPRASSSKTPANAKRTRSRSKDEKEAAE
SGPTFADLGLSKKTLATLDEIGFERPSKIQATFLPIALSGRDCSGQARTGTGKTAAFTLP
MLEKLDLDRTVIQGLILAPTRELAEQVSQEMRKLSGGRVKTVVIVGGRPMGPQVDAIKRG
AQVVVGTPGRVMDLMGRGQLGLENVAFAVLDEADRMLDDGFRPDIEKILRKCPKDRQTLL
LSATMPPEVEELAAKFMKNPERVDMSEDALVATEMIEQFVLTVDPDRKFGALLHVLKQEK
PKQCLVFTRTKRGAEKLYERFSRKLPSCAMMHGDLQQRKREKTLQAFREGKIRMLVATDV
VGRGIDISGISHIVNFDVPEFQDDYVHRIGRTGRMSSDTNGRAITFVCRDQGDQLTKIEI
RVSQVLPTYPLKDFEAARPVIRKTVQDHDATIIPVKKVTSPLFGGS
NT seq
1401 nt
NT seq
+upstream
nt +downstream
nt
atgcccaccaccacccgggccaaacggcccgcggcccgccgcaccgctcaaacctccccc
gccgccgacaaacgccgctccgcggacgattcgccgccccccagggcgtcttcgtcgaag
acgccggcgaacgcgaagcggacccgcagccggtccaaggacgaaaaggaagccgccgag
agcggcccgaccttcgctgacctcggcctgtcgaaaaagacgctcgccacgctggacgaa
atcgggttcgagcggcccagcaagattcaggcgaccttcctgccgatcgccctctccggc
cgcgactgcagcggtcaggcccgcaccggcaccggcaagacggcggcgttcacgctgccg
atgctcgaaaagctggacctcgaccgcaccgtcattcaaggcctgattctcgcgccgacc
cgcgagttggcggagcaggtcagccaggaaatgcggaagctctccggcggtcgcgtgaag
accgtcgtgatcgtcggcggccgcccgatggggccgcaggtggacgctatcaaacgcggc
gctcaggtcgtcgtcggtacccccggccgggtgatggacctgatgggccgcggtcagctg
ggtctggagaacgttgccttcgccgtcctggacgaagccgaccggatgctcgacgacggg
ttccgcccggacatcgagaaaatcctccgcaagtgcccgaaggatcggcaaacgctgctg
ctctccgccacgatgccccccgaggtggaggagttggcggccaagttcatgaagaacccc
gagcgggtcgacatgtccgaggacgcccttgtggcgacggagatgatcgagcagtttgtg
ctcacggtggacccggaccgcaagttcggcgccctgctgcacgttttgaagcaggaaaag
ccgaagcagtgcctcgtgttcacccgcaccaaacggggcgccgagaagctgtacgagcgg
ttcagccgcaagctgcccagttgcgcgatgatgcacggcgacctgcagcagcgtaagcgg
gagaagacgctccaggccttccgcgagggcaagatccggatgctcgtcgccaccgacgtg
gtcggccgcgggatcgacatctccgggatcagccacatcgtcaacttcgacgtcccggaa
ttccaggacgactacgtccaccgcatcggccgcaccggccggatgagcagcgacaccaac
ggccgggcgatcaccttcgtctgccgcgatcagggcgatcagctgacgaagatcgagatc
cgcgtctcccaggtgctgccgacctacccgctaaaggacttcgaggccgcccgcccggtg
atccgcaagacggtgcaggaccacgacgcgacgatcatccccgtcaagaaggtgacgagt
ccgctgttcggcgggagttga
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