KEGG   Thermaerobacillus caldiproteolyticus: ISX45_03920
Entry
ISX45_03920       CDS       T06899                                 
Symbol
hfq
Name
(GenBank) RNA chaperone Hfq
  KO
K03666  host factor-I protein
Organism
acai  Thermaerobacillus caldiproteolyticus
Pathway
acai02024  Quorum sensing
acai03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:acai00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    ISX45_03920 (hfq)
 09140 Cellular Processes
  09145 Cellular community - prokaryotes
   02024 Quorum sensing
    ISX45_03920 (hfq)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:acai03019]
    ISX45_03920 (hfq)
   03036 Chromosome and associated proteins [BR:acai03036]
    ISX45_03920 (hfq)
Messenger RNA biogenesis [BR:acai03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   Other RNA degradation factors
    Chaperones
     ISX45_03920 (hfq)
Chromosome and associated proteins [BR:acai03036]
 Prokaryotic type
  Nucleoid associated proteins
   Other nucleoid associated proteins
    ISX45_03920 (hfq)
SSDB
Motif
Pfam: Hfq LSM Hfq_1 DUF5608
Other DBs
NCBI-ProteinID: QPA32151
LinkDB
Position
757553..757777
AA seq 74 aa
MKNSINIQDQFLNQLRKDGTQVTVFLLNGFQLRGFVKGFDNFTVLLEVQGKQQLIYKHAI
STFAPEKNVQFETE
NT seq 225 nt   +upstreamnt  +downstreamnt
atgaaaaattcaattaacattcaagaccaatttttaaaccaattgcgtaaggatggcaca
caagtaactgtatttttgcttaatggctttcaacttcgcggctttgtaaaagggtttgat
aattttacggttcttttggaagtacaaggcaaacagcagcttatttataagcatgctatt
tctacgtttgccccagaaaagaatgttcagtttgaaactgaataa

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